Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10l06
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1032 - 13546130-13547557 29 1.4
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 27 3.1
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535... 27 4.1
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 27 5.5
03_02_1030 - 13536511-13537929 27 5.5
06_03_0002 - 15280292-15281550,15282714-15282840 26 7.2
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 26 7.2
11_06_0594 + 25349612-25352530 26 9.6
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 26 9.6
>03_02_1032 - 13546130-13547557
Length = 475
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 223 CCDVYRSQNHVVLQVKHIPIPIKRHLKDNY 312
C D +N +Q ++IP+P++ HLK ++
Sbjct: 272 CDDALSGRNDDAVQFRYIPLPVECHLKISF 301
>10_07_0194 -
13957709-13957925,13960065-13960129,13960281-13960454,
13960847-13960889,13961081-13961225,13961305-13961413,
13961694-13961822,13961935-13962031,13962639-13962703,
13963275-13963439
Length = 402
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 54 LKILKCS*NVLSANTVLTFNSIEFYSTRTPVRNSIKF 164
L+ILKC+ +LS +T + ++ Y+ +TP+ + KF
Sbjct: 79 LRILKCADVILSEDTRHSGKLLQHYNIKTPLLSFHKF 115
>08_02_1339 +
26252609-26252925,26253025-26253227,26253379-26253536,
26253802-26253870,26253980-26254461,26254558-26254766,
26254865-26254901,26254991-26255075,26255186-26255269,
26255344-26255412,26255520-26255663
Length = 618
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 277 VCASLGELRGFETGRHHNIFSLRE 206
+C +L + F+T HN+FSL E
Sbjct: 100 ICPALDSITSFKTNGGHNLFSLLE 123
>07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 307 YLLSAFLLVWVCASLGELRGFETGRHHNIFSLREEFVIY--HNELILYHQNLILLRT 143
++L+AF +W S+G G + IFS V+Y + L++Y L+ L T
Sbjct: 1036 WMLAAFATIWGFGSVGLPAGMFGEKFPKIFSRHMGHVLYAAFSVLVIYSIYLLALST 1092
>03_02_1030 - 13536511-13537929
Length = 472
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 223 CCDVYRSQNHVVLQVKHIPIPIKRHLKDNY 312
C D +N +Q ++IP+P++ HL ++
Sbjct: 269 CDDALSGRNDDAVQFRYIPLPVECHLNISF 298
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 8 RNYSKRNSERYTKKRIENFK 67
R YSKRNS++ TK FK
Sbjct: 431 RKYSKRNSKKQTKNENPEFK 450
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 319 MVSNYLLSAFLLVWVCASLGELRGFETGRHHNIFSLREEFVIYHNELIL 173
+ S +L L W+C S G R E + H + L++ + ++ L L
Sbjct: 1913 ITSLLILMCICLAWICKSRGIHRSKEIQKKHRLQHLKDSSELENDNLEL 1961
>11_06_0594 + 25349612-25352530
Length = 972
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 68 VLVKCSKC*YSVNF*LDRILFNPN 139
+LVKCS C +S+ L + NPN
Sbjct: 391 ILVKCSPCIFSMKMLLRFLYANPN 414
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 297 VPFYWYGYVLHLENYVVLRPVDI 229
VP YW+ LHL N +L+ +D+
Sbjct: 1439 VPGYWFVESLHLLNNFILKAMDM 1461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,221,125
Number of Sequences: 37544
Number of extensions: 116982
Number of successful extensions: 247
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -