Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l06
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.35 
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_19582| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.2e-06)        27   4.3  
SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -1

Query: 229 HNIFSLREEFVIYHNELILYHQNLILLRTGVRVE*NSIELKVNTVLALRTFHEHFKIF 56
           HN+  LR   +I  + L+++  NLI+LR  + +  + + +  + ++ LR    H  IF
Sbjct: 351 HNLLILRHNLLILRHHLLIFRHNLIILRHNLLILRHHLLILRHNLIILR---HHLLIF 405



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 229 HNIFSLREEFVIYHNELILYHQNLILLRTGVRVE*NSIELKVNTVLALRTF 77
           HN+  LR   +I+ + LI+   NL++LR       N I L+ N + + RTF
Sbjct: 393 HNLIILRHHLLIFRHNLIILRHNLLILRH------NLIILRHNFLSSDRTF 437



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 229 HNIFSLREEFVIYHNELILYHQNLILLR 146
           HN+  LR   +I+ + LI+   NL++LR
Sbjct: 470 HNLLILRHHLLIFRHNLIILRHNLLILR 497



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 229 HNIFSLREEFVIYHNELILYHQNLILLRTGVRVE*NSIELKVNTVLALR 83
           HN+  LR   +I  + L++   NLI+LR  + +  +++ +  + +L LR
Sbjct: 372 HNLIILRHNLLILRHHLLILRHNLIILRHHLLIFRHNLIILRHNLLILR 420



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 229 HNIFSLREEFVIY-HNELILYHQNLILLRTGVRVE*NSIELKVNTVLALRTFHEHFKIFN 53
           HN+  LR   +I  HN +IL H  LI     + +  N + L+ N ++    F    + F 
Sbjct: 379 HNLLILRHHLLILRHNLIILRHHLLIFRHNLIILRHNLLILRHNLIILRHNFLSSDRTFL 438

Query: 52  S 50
           S
Sbjct: 439 S 439



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 235 RHHNIFSLREEFVIYHNELILYHQNLILLR 146
           RHH +       ++ HN LIL H NLI+LR
Sbjct: 399 RHHLLIFRHNLIILRHNLLILRH-NLIILR 427



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 235 RHHNIFSLREEFVIYHNELILYHQNLILLR 146
           RHH +       ++ HN LIL H NL++LR
Sbjct: 476 RHHLLIFRHNLIILRHNLLILRH-NLLILR 504



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 235 RHHNIFSLREEFVIYHNELILYHQNLIL 152
           RHH +       ++ HN LIL H  LIL
Sbjct: 364 RHHLLIFRHNLIILRHNLLILRHHLLIL 391


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -2

Query: 270 LHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT*YCYALGFGLNKILSS*KLTLY 94
           L+  NY++LR +  TT + +  ++  I+   ++  +T   +A    L K+ S+ ++T Y
Sbjct: 139 LYYANYIILRKLHSTTQATFYYANYIILRKLHYTAQTTLYFANYILLRKLHSTTQITFY 197


>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 232 HHNIFSL-REEFVIYHNELILYHQNLILLRTGVRV 131
           +HN F L    F +YHN   LYH   +    G+ V
Sbjct: 147 YHNRFPLYHNRFPLYHNRFPLYHNRFLAGGIGLGV 181


>SB_19582| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.2e-06)
          Length = 150

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 276 YVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT 160
           Y+     Y+   PVDITT   Y  +S   IT S   I T
Sbjct: 60  YITTSPEYITTSPVDITTSPVYITTSPEYITTSKVYITT 98



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 276 YVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT 160
           Y+     Y+   PVDITT   Y  +S   IT S   I T
Sbjct: 4   YITTSPEYITTSPVDITTSPVYITTSPEYITTSPEYITT 42



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 276 YVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT 160
           Y+     Y+   PVDITT   Y  +S   IT S   I T
Sbjct: 32  YITTSPEYITTSPVDITTSPVYITTSPEYITTSPEYITT 70


>SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 304 DNYLPYYYTCYFIKK 348
           D+YLP  YTC+F+ K
Sbjct: 9   DHYLPESYTCFFLLK 23


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 304  DNYLPYYYTCYFIKK 348
            D+YLP  YTC+F+ K
Sbjct: 3530 DHYLPESYTCFFLLK 3544


>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 2   SNRNYSKRNSERYTKKRIENF 64
           + +NYS + +E Y+ K IEN+
Sbjct: 292 ATKNYSTKATENYSTKAIENY 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,912,697
Number of Sequences: 59808
Number of extensions: 152027
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)