Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10l06
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine re... 35 0.019
U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 33 0.076
U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 28 2.2
Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical pr... 27 2.9
AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear recep... 27 2.9
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 27 5.0
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 27 5.0
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 27 5.0
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 27 5.0
Z72515-3|CAA96683.2| 330|Caenorhabditis elegans Hypothetical pr... 26 8.7
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 26 8.7
>AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 7 protein.
Length = 330
Score = 34.7 bits (76), Expect = 0.019
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 288 YWYGYVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT*YCYAL 142
+W+G+ LH N +VL +D+ Y + T F++R Y + L
Sbjct: 65 HWFGFFLHCSNRIVLHTIDLHNYLILDYCDMPASTTRCFVLRVQYVFGL 113
>U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical
protein F07F6.2 protein.
Length = 261
Score = 32.7 bits (71), Expect = 0.076
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -1
Query: 244 ETGRHHNIFSLREEFVIYHNELILYHQNLILL 149
ET R + S RE F+ Y L+LY QNL+LL
Sbjct: 110 ETSRKYIAISTREMFMYYVELLLLYFQNLLLL 141
>U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 20 protein.
Length = 330
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -2
Query: 282 YGYVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT*YCYAL 142
+G+ +H + ++L +D+ Y+ ++ + T FI+RT Y + +
Sbjct: 67 FGFFVHFFSRIILHGLDLYNYAVFDYCNMPASTIRCFILRTQYVFGM 113
>Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical
protein K06B4.2 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 2 SNRNYSKRNSERYTKKRIENFKVLVKCSKC 91
+ +NY+K +Y KK E+F +L KC C
Sbjct: 30 ATKNYAKFTC-KYDKKCFESFTILPKCQFC 58
>AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear receptor
NHR-52 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 2 SNRNYSKRNSERYTKKRIENFKVLVKCSKC 91
+ +NY+K +Y KK E+F +L KC C
Sbjct: 30 ATKNYAKFTC-KYDKKCFESFTILPKCQFC 58
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 51 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 146
E+ I K +L+ TF+ I FYS PV
Sbjct: 256 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 287
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 51 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 146
E+ I K +L+ TF+ I FYS PV
Sbjct: 371 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 402
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 51 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 146
E+ I K +L+ TF+ I FYS PV
Sbjct: 367 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 398
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 51 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 146
E+ I K +L+ TF+ I FYS PV
Sbjct: 256 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 287
>Z72515-3|CAA96683.2| 330|Caenorhabditis elegans Hypothetical
protein T11A5.3 protein.
Length = 330
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 297 VPFYWYGYVLHLENYVVLRPVDITTYSAYEKSS*FIITNSY--FIIRT*Y 154
+ + +G++LH ++L +D+ Y+ + ++ N Y F++R Y
Sbjct: 60 IQLHLFGFMLHCSGRIILHSIDLFNYTTQDNPC-DMVPNIYRCFVLRLMY 108
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 250 GFETGRHHNIFSLREEFVIY 191
GF+ R+HN F +R +FV++
Sbjct: 66 GFKLFRNHNHFCIRRQFVLH 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,828,078
Number of Sequences: 27780
Number of extensions: 120107
Number of successful extensions: 305
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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