Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l06
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   4.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   5.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 267 HLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT*YCYALGFGL 130
           ++ N  +     ++ Y+  ++ S +IITNS+ I    +    GFG+
Sbjct: 9   NITNSSITETYFVSAYNLNQEDSNWIITNSFII----FTMQTGFGM 50


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 50  RIENFKVLVKCSKC 91
           RI+++K  +KC KC
Sbjct: 140 RIDSYKSNLKCDKC 153


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 226 CDVYRSQNHVVLQVKHIPIPI 288
           C+ YR   + +  ++ IPIP+
Sbjct: 101 CNNYRKLYYNINYIEQIPIPV 121


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 297 VPFYWYGY 274
           +P+YWY Y
Sbjct: 295 LPYYWYKY 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,616
Number of Sequences: 438
Number of extensions: 1605
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)