Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l06
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate 1-p...    27   3.5  
At5g63080.1 68418.m07917 transcription factor jumonji (jmjC) dom...    27   4.6  
At1g12000.1 68414.m01386 pyrophosphate--fructose-6-phosphate 1-p...    27   4.6  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    26   8.1  
At2g02890.1 68415.m00239 F-box family protein contains Pfam PF00...    26   8.1  

>At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase,
           pyrophosphate-dependent) (Pyrophosphate-dependent
           6-phosphofructose-1-kinase) (PPI-PFK) {Ricinus communis}
          Length = 585

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 156 YCYALGFGLNKILSS*KLTL 97
           YCYALG+G   +L S K  L
Sbjct: 472 YCYALGYGAGSLLQSGKTGL 491


>At5g63080.1 68418.m07917 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain PF02373:
           jmjC domain
          Length = 462

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 262 GELRGFETGRHHNIFSLREEFVIYHNELILYH 167
           GE+    +G HH +++L +   I HN L  Y+
Sbjct: 244 GEIIFVPSGWHHQVYNLEDTISINHNWLNAYN 275


>At1g12000.1 68414.m01386 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus
           communis}; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 566

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 156 YCYALGFGLNKILSS*KLTL 97
           YCYALG+G   +L+S K  L
Sbjct: 454 YCYALGYGAGVLLNSGKTGL 473


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  RYTKKRIENFKVLVKCSKC*YSVNF*LDRILFN 133
           R+  +R  N K+L++C +C     F  ++ LFN
Sbjct: 65  RFCTRRRRNKKILIRCKEC--GKGFLYEKCLFN 95


>At2g02890.1 68415.m00239 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 531

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 286 LVWVCASLGELRGFETGRHHNI-FSLREEFVIY 191
           L+  C + G L+G+E   H N   ++ EE ++Y
Sbjct: 99  LLCFCETFGSLKGYEVENHMNASVTMLEEAIMY 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,192,642
Number of Sequences: 28952
Number of extensions: 103927
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)