Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l03
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    29   1.1  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    29   1.1  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      29   1.1  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   1.5  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 216 FGGLSMNGSWIFCMCEVYPGGVCNPSF 136
           FGG   N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 170 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 328
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 170 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 328
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 216 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 130
           FGG   N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 STHPTVAKERSDFVACPRLAFDCYKIVSARF 343
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 STHPTVAKERSDFVACPRLAFDCYKIVSARF 343
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 166 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 270
           D   T+  G  + +  EVT  ATIN++T    D S
Sbjct: 43  DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,594
Number of Sequences: 27780
Number of extensions: 181397
Number of successful extensions: 494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)