Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l01
         (235 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q90173 Cluster: Zinc finger protein CG30; n=5; Nucleopo...    64   4e-10
UniRef50_Q90176 Cluster: Putative 15 kDa capsid protein; n=5; Nu...    32   2.8  
UniRef50_A2FKG5 Cluster: Serine/threonine protein phosphatase; n...    31   5.0  

>UniRef50_Q90173 Cluster: Zinc finger protein CG30; n=5;
           Nucleopolyhedrovirus|Rep: Zinc finger protein CG30 -
           Bombyx mori nuclear polyhedrosis virus (BmNPV)
          Length = 266

 Score = 64.5 bits (150), Expect = 4e-10
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +2

Query: 2   KVLSNKNIELIKHKNLLQNEYTTLQSYKC 88
           KVLSNKNIELIKHKNLLQNEYTTLQSYKC
Sbjct: 223 KVLSNKNIELIKHKNLLQNEYTTLQSYKC 251


>UniRef50_Q90176 Cluster: Putative 15 kDa capsid protein; n=5;
           Nucleopolyhedrovirus|Rep: Putative 15 kDa capsid protein
           - Bombyx mori nuclear polyhedrosis virus (BmNPV)
          Length = 126

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 227 LYRVNFNSKTXXXXXXXXXKVECYV 153
           +YRVNFNSKT         KVECYV
Sbjct: 100 IYRVNFNSKTKEIKEYYYIKVECYV 124


>UniRef50_A2FKG5 Cluster: Serine/threonine protein phosphatase; n=2;
           Trichomonas vaginalis G3|Rep: Serine/threonine protein
           phosphatase - Trichomonas vaginalis G3
          Length = 425

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 69  VVYSFCNKFLCLINSIFLFDKTF 1
           V Y+F N F CL  +I LFDK F
Sbjct: 160 VTYAFANAFACLPMAILLFDKIF 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,122,371
Number of Sequences: 1657284
Number of extensions: 1081732
Number of successful extensions: 2998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2997
length of database: 575,637,011
effective HSP length: 56
effective length of database: 482,829,107
effective search space used: 10139411247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)