Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l01
         (235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958...    25   6.5  

>03_02_0844 +
           11695159-11695263,11695402-11695463,11695789-11695876,
           11695958-11696019,11696250-11696346,11696592-11696984,
           11697072-11697611,11697856-11697966,11698102-11698242,
           11698290-11698394,11698480-11698557,11699346-11699472,
           11699580-11699625,11699709-11699754
          Length = 666

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 8   LSNKNIELIKHKNLLQNEYTTLQSYKC 88
           LSN  ++  +HKN+  N  TT   + C
Sbjct: 502 LSNAQLQTNEHKNVDNNSLTTSNPFTC 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,881
Number of Sequences: 37544
Number of extensions: 23749
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)