Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l01
         (235 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.59 
SB_30094| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +2

Query: 8    LSNKNIELIKHKNL---LQNEYTTLQSY 82
            LSNKN+EL K K L   LQN+ ++L  Y
Sbjct: 1575 LSNKNMELAKEKELSTALQNQLSSLSGY 1602


>SB_30094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 32  IKHKNLLQNEYTTLQSY 82
           +KH N +QN+YTT   Y
Sbjct: 87  VKHINRVQNKYTTFNCY 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,736,687
Number of Sequences: 59808
Number of extensions: 33422
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 16,821,457
effective HSP length: 55
effective length of database: 13,532,017
effective search space used: 297704374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)