Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k24
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641...    30   2.0  
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    29   3.4  
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19...    29   4.5  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    29   4.5  
05_01_0368 + 2892476-2893465                                           28   6.0  
01_06_1509 - 37855894-37856679,37856766-37856952,37857508-378575...    28   7.9  

>01_06_0877 +
           32662978-32663179,32663718-32663951,32664080-32664143,
           32664250-32664379,32664483-32664624,32664806-32665063,
           32665168-32665252,32665609-32665711,32666281-32666406,
           32666476-32666589,32666769-32666887,32666993-32667080,
           32667154-32667246,32667325-32667414,32667522-32667641,
           32667782-32667877
          Length = 687

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 549 DNAVVRHV-DIILHVLFCMEDCRVDEKSHRLFKHKCKFQCGKKLLRRYHVYYGKRDHWAV 373
           +N   +H+  I++H+++C+++C + E SH  ++          +  ++ +   K D+W  
Sbjct: 70  NNYHTKHLAKILIHLVWCLQEC-MAESSHAAYRKAINAAYISSIFLKFIIENAKTDNWQE 128

Query: 372 L 370
           L
Sbjct: 129 L 129


>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -1

Query: 284 ESVCWNSIVYLEID------YENAEILSQNCVYENLYKKCIMCRAIVRDHEPTVFNQNYS 123
           +S  W S   ++ID      Y     L +NC+    Y   + CR + +D  P+   +NY 
Sbjct: 737 DSSKWQSYYAVDIDNVKAKFYSFGHSLKKNCIVSP-YVISVFCRVLFQDSHPSKSKRNYF 795

Query: 122 VIIMG 108
            + +G
Sbjct: 796 FLSIG 800


>09_01_0005 -
           193214-193228,193659-193776,193876-194072,194534-195493
          Length = 429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 464 RCDFSSTRQSSIQNKTCKIISTCRTT 541
           R   SS     + N TCKI STC+TT
Sbjct: 210 RDHLSSASSQLMTNHTCKINSTCKTT 235


>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 IFEHVDLKRGKQHPTQPSDHVYHNT 404
           ++EHVDL+R K+  TQP     ++T
Sbjct: 844 LYEHVDLRRSKRLKTQPDRFTSYDT 868


>05_01_0368 + 2892476-2893465
          Length = 329

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 533 GMWILFYTFYFVWKIVVWTKNRIGSSNTNVNFNAEKNFYVAI 408
           G+W+   T YF+ +   W +    SS  +V F   ++F VA+
Sbjct: 208 GLWVRVSTIYFIGRAASWLR----SSRAHVRFPIWEDFCVAV 245


>01_06_1509 -
           37855894-37856679,37856766-37856952,37857508-37857580,
           37857772-37857816,37858004-37858010
          Length = 365

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +2

Query: 170 LGT*CIFCKGSHIHSFGSRFRHFRSQFPNT-----R*SSSTPIPNRSDD 301
           L T C+FC+G   H+ G   +  R   P T       SSS PI N  DD
Sbjct: 34  LPTNCLFCRGVDSHAPGGLLKFLRKTTPRTEQHVCNGSSSQPI-NVGDD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,396
Number of Sequences: 37544
Number of extensions: 396057
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)