Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k24
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.023
SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)                 35   0.053
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   33   0.16 
SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)                   30   2.0  
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                29   2.7  
SB_20772| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 29   4.6  
SB_38744| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   28   8.1  
SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
 Frame = -1

Query: 647 IVFVLSIMGVADNRYAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFV--WKIVVWTK 474
           IV +L++  +A +RY  ++   G+R +   +  I++   +W +  +   V  W   +W+ 
Sbjct: 115 IVAILTMTAIAVDRYRIIVLTAGQRLLPKHAYRILVFIWLWAIVQSLPPVLGWNEYIWSP 174

Query: 473 NRIGSSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQIYVFKNGHLPTLDVLYRH 294
               SS     F  +K+ Y+ +   +  +I  LC M+F   ++Y+     + T  +   H
Sbjct: 175 T---SSVCRAKF-GQKDGYIELVAFLSYIIP-LCIMVFCYLRVYI-TEAFIFTGFMASSH 228

Query: 293 YDLESVCWNSIVYLEID 243
               SVC N I+YL ++
Sbjct: 229 ----SVC-NPIIYLTMN 240


>SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)
          Length = 317

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 491 IVVWTKNRIGSSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQIYVF 336
           + +W K +  +S+ N  F A  N  +  T  +V V++ LC++  AA+ IY F
Sbjct: 182 MAIWIKLKFYNSSPNARF-ARSNNKLTQTLFIVTVLSFLCYLPMAAYTIYYF 232


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 185 CIMCRAIVRDHEPTVF-NQNYSVIIMGVLTILAVQCWNLYVQLKEMRRNIYIKRR 24
           CI+ R +  D E T+F +Q   +I++G+  I+     ++YV +K   RN  +KR+
Sbjct: 770 CILVRDLA-DRETTIFYSQILLLILVGLYVIIFAMYVHIYVYVKRSSRNAGVKRK 823


>SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = -1

Query: 554 IPIMLSFGMWILFYTFYFVWKIVVWTKNRIGSSNTNVNFNAEKNFYVAITCIMVNVITGL 375
           + I +SF +  L   F     + +W K +  S   N   N   N  + +T  ++ +++ L
Sbjct: 152 LTIQMSFAIGALGIVFGCY--LAIWIKAKYASPFAN---NRPVNNKLTVTLFLITLLSFL 206

Query: 374 CWMLFAAFQIY 342
           C++ +AAF +Y
Sbjct: 207 CYLPYAAFSLY 217


>SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 29/137 (21%), Positives = 62/137 (45%)
 Frame = -1

Query: 668 SLLLAYLIVFVLSIMGVADNRYAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFVWKI 489
           S L++  + +++++ G+    Y F  E++  +++  + +P++L     +L    Y V  I
Sbjct: 282 SYLISIALTWLIAL-GITLIYYVFKYELKAPKAIFYVLLPVLLV--SLVLICLSYAV--I 336

Query: 488 VVWTKNRIGSSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQIYVFKNGHLPTLD 309
           +V  + R GS    +     +   +A T  +V   +   W+ F   QI   K     + D
Sbjct: 337 LVKIRRRNGSCLAMIAKGQRQERKLAHTLCIVTATSLATWLPFTIMQIMSIKGTSAMSSD 396

Query: 308 VLYRHYDLESVCWNSIV 258
            ++    ++  C NS+V
Sbjct: 397 TVFSVLLIQ--CSNSLV 411


>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
          Length = 1709

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = -3

Query: 567 YQSIYTDNAVVRHVDIILHVLFCMEDCRVDEKSHRLFKHKCKF---QCGKKLLRRYHVYY 397
           +  +YT NA  + V + L VL+   D     +S ++  +KC+     CG  L   ++   
Sbjct: 721 HSGVYTYNAATQTVHMGLEVLWRGTDLVYKPESLKVLLYKCEVAYTDCGTCLNADFNFKC 780

Query: 396 GKRDHWAVLDAVCRVSNLRVQKWSSTDARCFIS 298
           G    W   +  C V     Q W    + C I+
Sbjct: 781 G----WCKSEGKCLVKQACSQNWVHPASPCLIA 809


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -1

Query: 461  SSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQIYVFKNGHL 321
            S +  ++F   +N+Y+A+ CI+  +   L  +L++A    + ++G L
Sbjct: 901  SEDQQLHFQITRNYYLALFCILALLPAALLVVLYSAICYTLVRHGQL 947


>SB_20772| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
 Frame = -1

Query: 605 YAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFVWKIVVWTKNRIGSSNTNVNFNAEK 426
           Y F L+      +INL +   +  G+ ++ Y       +V+W K    +  ++ + N  +
Sbjct: 148 YVFSLKKPSVPGIINL-VCFSVEIGLIMISY-------LVIWIKRVFFNPMSDTSENRNE 199

Query: 425 NFYVAITCIMVNVITGLCWMLFAAFQIYVFKNGHLPTLD---VLYRHY--DLESVCWNSI 261
           N  +++T +++   + + W+      ++  + G L T      +Y  Y   L +   N +
Sbjct: 200 NQRLSMTLVILIATSLVTWLPSTILNLFFKRKGCLQTKTAYVAVYLSYFLVLSNSFLNVL 259

Query: 260 VYLEIDYENAEILSQNCVYENLYKKCIMCRAIVRDHEPTVFN 135
           VY     E  + L +        ++C+ CR  V   EP V +
Sbjct: 260 VYYLRMPEFQKALKE-LFCRGTPQECVNCRHQVHQVEPAVIS 300


>SB_38744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 683 FGLNASLLLAYLIVFVLSIMGVADNRYAFLLEIEGKRS--VINLSIPIMLSFGMWILFYT 510
           FG    ++ A++I+F L+  G     +A   ++    +  V+NL++   L    WI++  
Sbjct: 26  FGALHYIIAAFIIIFGLTANGFICVAFAIKRKLRTVTNYFVVNLAVADFLLIFCWIVWMI 85

Query: 509 FYFV 498
            YF+
Sbjct: 86  LYFI 89


>SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 522 YPHAERQHYRYR*IDNRSLSFNFQQKRVSVVRHSHYR*HKHYQ 650
           Y H E +H  YR I+ R + +   + R    RH  Y  H  Y+
Sbjct: 47  YRHIEYRHIEYRHIEYRHIEYRHIEYRYIKYRHIEYH-HIEYR 88


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 532 PNDSIIGIDRLITDRFPSISSKNAYLLSAT 621
           P  S+IG + ++T R    S+K +YLLS T
Sbjct: 690 PELSVIGKESILTSRRKRKSNKTSYLLSTT 719


>SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 522 YPHAERQHYRYR*IDNRSLSFNFQQKRVSVVRHSHYR*HKHYQ 650
           Y H E +H  YR I+ R + +   + R    RH  Y  H  Y+
Sbjct: 160 YRHIEYRHIEYRHIEYRHIEYRHIEYRYIKYRHIEYH-HIEYR 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,507,511
Number of Sequences: 59808
Number of extensions: 510778
Number of successful extensions: 1428
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)