Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k24
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 236 NAEILSQNCVYENLYKK 186
           +AE++++ C+ E LYK+
Sbjct: 318 HAEVVARRCLCEYLYKQ 334


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 507 LFCMEDCRVDEKSHRLFKHKCKFQCGKKLLRRYHVYYGKRD 385
           ++C +  +  E   R+ KH  KF   K  LR  +++ G ++
Sbjct: 161 IYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKE 201


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 544 IIGIDRLITDRFPSISSKNAYLLSATPIIDNTNTIRYANNNEALS 678
           +IG    IT     I  + + L    P + N+N+I++ ++N   S
Sbjct: 190 LIGPSIRITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDYS 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,471
Number of Sequences: 438
Number of extensions: 5044
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)