Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k24
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14040.1 68414.m01660 EXS family protein / ERD1/XPR1/SYG1 fam...    34   0.10 
At4g37210.2 68417.m05267 tetratricopeptide repeat (TPR)-containi...    29   2.9  
At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containi...    29   2.9  
At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2...    29   2.9  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    29   2.9  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    28   6.6  
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    27   8.8  

>At1g14040.1 68414.m01660 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 798

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -1

Query: 644 VFVLSIMGVADNRYAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFVWKIVVWTKNRI 465
           VF L +  VA  R   LLE+EG++  +N   P+   FG +I+ +   +   I  W + R+
Sbjct: 421 VFSLIVALVAIIRTRNLLEMEGQKEYMNTMFPLYSLFG-FIVLHIIVYAANIYYWRRYRV 479

Query: 464 GSS 456
             S
Sbjct: 480 NYS 482


>At4g37210.2 68417.m05267 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 377

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -3

Query: 429 KKLLRRYHVYYGKRDHWAVLDAVCRVSNLRVQKWSSTDARCFISSLRFGIGVL 271
           ++L  +  V+  + D    +D   R   +RV  +   DA C  +  R+G+ +L
Sbjct: 81  EELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALL 133


>At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 492

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -3

Query: 429 KKLLRRYHVYYGKRDHWAVLDAVCRVSNLRVQKWSSTDARCFISSLRFGIGVL 271
           ++L  +  V+  + D    +D   R   +RV  +   DA C  +  R+G+ +L
Sbjct: 81  EELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALL 133


>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
           plant glutamate receptor family, PMID:11379626
          Length = 920

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 593 LEIEGKRSVINLSIPIMLSFGMWILFYTFYFVWKIVVWT-KNRIGSS-NTNVNFNAEKNF 420
           L+ E KR   +   P  LS  +W+    F+F+  I VWT ++R+ S      N+ A   F
Sbjct: 564 LKDEVKRDKFSFLKP--LSIELWLTTLVFFFLVGISVWTLEHRVNSDFRGPANYQASTIF 621

Query: 419 YVAITCIM 396
           + A + ++
Sbjct: 622 WFAFSTMV 629


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 644 VFVLSIMGVADNRYAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFVWKIVVWTKNRI 465
           +F L +  VA  R   +L+ +G++  +N   P+   FG  +L  T Y    I  W + R+
Sbjct: 365 MFSLIVALVAIVRTRNILQDDGQKQYMNTMFPLYSLFGFIMLHMTMYAA-NIYFWRQYRV 423

Query: 464 GSS 456
             S
Sbjct: 424 NYS 426


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 186 FFVKVLIYTVLAQDFGIFVVNFQIHDRVPAHRF 284
           +FV + IY V  + FGI+ ++ ++HD  P +++
Sbjct: 128 YFVYIAIYLVFVE-FGIYWMHRELHDIKPLYKY 159


>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 257 YLEIDYENAEILSQNCVYENLYKKCIMCRAIVRD 156
           + EI     EI+S    YE + K+C +C+ +  +
Sbjct: 180 FKEIQLPTGEIVSVTFDYERIRKRCFLCQRLTHE 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,464
Number of Sequences: 28952
Number of extensions: 339793
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)