Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k22
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.21 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   0.64 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 416  LVDDTGTPRPYLCNNGRLNMNL--DTVQFSPDACECSSGYEKMLFRQTALARTIPVCIPN 589
            + DDT   + YLCN G+L + +  + + ++ D C+     E      + +A +    +P+
Sbjct: 2243 VADDTNCAQYYLCNQGQLQLQVCPNGLFWNKDHCDWPENTECHPDASSTMAPSTTPMVPD 2302

Query: 590  R 592
            +
Sbjct: 2303 K 2303



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 632  LHFSCKRVYTNWPSDSEC 579
            LH++ +R   +WP  ++C
Sbjct: 1135 LHWNKERKICDWPKSAKC 1152


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +2

Query: 332 DPALGLLHIFSAGGDFVVSQACVSTYRDLVDDTGTPRPYLCNNGRLNMN 478
           DP    + I   G  F++S        D     G P PY  N G L  N
Sbjct: 247 DPQKVTIGIAFYGHHFILSDPSKHGLNDATAAPGEPGPYTVNLGSLGYN 295


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 570 IVRASAVWRNSIFS 529
           IVR  AVWR+ +F+
Sbjct: 218 IVRLEAVWRSGVFA 231


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/33 (27%), Positives = 11/33 (33%)
 Frame = -2

Query: 671 FVKARTSSC*QNLLHFSCKRVYTNWPSDSECTR 573
           F      +C    L   CKR+Y        C R
Sbjct: 771 FDSCTVCTCDAKYLEIKCKRIYNEKQCCKNCAR 803


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,949
Number of Sequences: 336
Number of extensions: 4042
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)