Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k22
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    30   0.30 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.2  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   1.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.8  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.5  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.5  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    25   8.5  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 458 NGRLNMNLDTVQFSPDACECSSGYEKMLFRQTALART 568
           N   ++ + T QF+ D  E +S + + +FRQ+ L RT
Sbjct: 391 NDEFDLTMRTPQFNYDGVENTSSFVERIFRQSGLQRT 427


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/85 (21%), Positives = 30/85 (35%)
 Frame = -2

Query: 560 PAPFGEIAFFHSRSNIRTRPAKIAPCPNSYSADHCCIDKASAFPYRPPSLCTCSRMLETR 381
           P  F ++ + H    ++     I      Y  D   I K S  PY P +    +  +   
Sbjct: 690 PESFSKLLYSHIEPMLKVSITPIGSFRRPYPLDTTLIVKPSGQPYAPSTSRERNNNISEL 749

Query: 380 QNLRLRRKCEASPVRDRILSSPEPV 306
            N R + + +  P      S  EP+
Sbjct: 750 SNSRTKHRAKDDPKGSFCFSVDEPM 774


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 455 CIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 321
           C+     +P      C  +  LET   +RLR K      +DRI+S
Sbjct: 508 CLRDRLIYPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 371  GDFVVSQACVSTYRDLVDDTGT--PRPYLCNNGRLNMNL 481
            G F +++AC     D + +TGT  P PYL  +G  ++ L
Sbjct: 1969 GIFFITKACGILLLDSISNTGTIMPTPYLDIHGETDLQL 2007


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +2

Query: 269 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 430
           DG     +  L+A  P  +      D  LG+       G  V  QACVS YR  ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 443 PYLCNNGRLNMNLDTVQFSPDACECSSGYEKM--LFRQTALARTIPVCI 583
           P+LCN+G+  + +    F   AC    G   +  L+       + P CI
Sbjct: 41  PFLCNSGKKFLQISNASFFLPACFYLLGSSSIIQLYEPLLWLSSFPFCI 89


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -2

Query: 374 LRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTV 195
           L  R K       ++ L S  P+R  K +  +KNHP         +  + L  A P +T 
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479

Query: 194 T 192
           T
Sbjct: 480 T 480


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 608 YTNWPSDSECTRGSCEPAPFGEIA 537
           Y N   D  C RG  +P+  G+ A
Sbjct: 468 YVNKKRDERCARGEFDPSAIGDFA 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,029
Number of Sequences: 5004
Number of extensions: 64575
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)