Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k22
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0977 - 12842948-12843572,12844326-12844741 30 1.7
07_01_0005 + 41687-43405 29 2.9
01_06_0029 + 25751750-25752077,25753501-25753622,25754344-257545... 29 2.9
05_07_0230 - 28540114-28540323,28540414-28540548,28540779-285409... 29 3.9
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 29 3.9
03_05_1008 - 29644352-29645297,29645381-29645769 29 3.9
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 5.1
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 29 5.1
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 5.1
>03_02_0977 - 12842948-12843572,12844326-12844741
Length = 346
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 289 GGVTKTILAGQLACSAGNHAVVSTLLIRHAR 197
G TK ++AG LA +G AVV LL H R
Sbjct: 209 GYATKRLVAGLLAVESGQDAVVRGLLFEHRR 239
>07_01_0005 + 41687-43405
Length = 572
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 596 PSDSECTRGSCEPAPFGEIAFFHSRSNIRTRPAKIAPCPNSYSAD 462
P+ + + SC P+P AFF + I I PC +S+ AD
Sbjct: 122 PNCATISASSCGPSPGQSAAFFVALYLIALGTGGIKPCVSSFGAD 166
>01_06_0029 +
25751750-25752077,25753501-25753622,25754344-25754540,
25754641-25754815,25755126-25755260,25755374-25755583
Length = 388
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = +2
Query: 374 DFVVSQACVSTYRDLVDDTGT---PRPYLCNNGRLNMNLDTVQFSPDACE---CSSGYEK 535
DF V++ S D+ +TGT P + N N D F E C Y
Sbjct: 247 DFGVARIEASNPSDMTGETGTLGYMAPEVLNGHPYNRKCDVYSFGICLWEIYCCDMPYPD 306
Query: 536 MLFRQ--TALART-----IPVCIPNRLANLYRRVYN*N 628
+ F + +A+ R IP C P+ LAN+ +R ++ N
Sbjct: 307 LSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDAN 344
>05_07_0230 -
28540114-28540323,28540414-28540548,28540779-28540953,
28541104-28541300,28541824-28541945,28542887-28543193
Length = 381
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = +2
Query: 374 DFVVSQACVSTYRDLVDDTGT---PRPYLCNNGRLNMNLDTVQFSPDACE---CSSGYEK 535
DF V++ S D+ +TGT P + N N D F E C Y
Sbjct: 240 DFGVARLEASNPSDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPD 299
Query: 536 MLFRQ--TALART-----IPVCIPNRLANLYRRVYN*N 628
+ F + +A+ R +P C P+ LAN+ +R ++ N
Sbjct: 300 LSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDAN 337
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 416 SLCTCSRMLETRQNLRLRRKCEASPVRD 333
SLC C+ R R+RR+CE RD
Sbjct: 18 SLCVCACSCFLRDGGRMRRRCEGGSARD 45
>03_05_1008 - 29644352-29645297,29645381-29645769
Length = 444
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 281 YKNHPGRSTRLQRWKSRSCLYTADPS-RTVTGSMNNL 174
Y+N PG TR+ + S S L DP+ + +TG MN L
Sbjct: 103 YRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVL 139
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = -2
Query: 428 YRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL------SSPEPVRLAKRWWRYKNHP 267
Y P L + RQ L + CE + +RD+ + + PE AK+W K
Sbjct: 1060 YVPKPLSKELQQQNLRQILPSEKSCEENKIRDKEIVERSTGAKPETAPEAKKWEGKKTSK 1119
Query: 266 GRSTRLQRWKSRS 228
G W+ R+
Sbjct: 1120 GHGKSHPSWRRRN 1132
>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 320 SPEPVRLAKRWWRYKNHPGRSTRLQ 246
SPEP + KR + +K H G +RL+
Sbjct: 1013 SPEPDKQVKRQFEFKTHDGSDSRLE 1037
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -2
Query: 503 PAKIAPCPNSYSADHCCIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL 324
P + PC + H +S+ P P+L T +R T LRL ++ +P+
Sbjct: 15 PLRRGPCAPRRQSAHASSSSSSSLP--SPALATSTRFAATAPILRLVQRRPRAPLTAARA 72
Query: 323 SSPE 312
+SP+
Sbjct: 73 ASPD 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,567,221
Number of Sequences: 37544
Number of extensions: 457471
Number of successful extensions: 1207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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