Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k22
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                30   1.7  
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      29   3.9  
SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 674 FFVKARTSSC*QNLLHFSCKRVYTNWPSDSECT---RGSCEPAPFGEIAFFHSRSNIRT 507
           F+ KA       N+LH   KR+ T+   D+ CT   +   E  P  ++  +H R+N+ T
Sbjct: 490 FYAKAMVQRADINVLHMIKKRLKTHLYLDAPCTLVEKYFSEYHPLHQMLRYHCRANLET 548


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
 Frame = +2

Query: 176  DCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC--NATNALL-NAQ-APDLIECDPAL 343
            DC++N  PCV +  C   C +       +C  G+   N    +L NA  A     C+   
Sbjct: 2122 DCTVN--PCVLNGGCTHTCTVLDGKPVCSCPQGYRLENPYRCVLSNASCASSEFACESGQ 2179

Query: 344  GLLHIFSAGGDFVVSQACVSTYRDLVDDTGTPRPYLCNNGR 466
             +   F   GD         +       T  P  + CNNGR
Sbjct: 2180 CVRKSFVCDGDNDCHDGSDESSLVCASWTCEPGHFSCNNGR 2220


>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 581 CTRGSCEPAPFGEIAFFHSRSNIRTRPAKIAPCPNSYSADHCC 453
           CTR   E   + E+     + N+   P +IAP  NS +  H C
Sbjct: 176 CTRSENEKQFYAELTRSQQQHNVSVAPIEIAPKNNSPATAHKC 218


>SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 303 FSKALVALQKPSWQVNSLAALEIT-QLSLHC*SVTHGNRFNEQSTPRLC*NVKFNGGA 133
           F+K    ++     +N L AL I    S    S   G R N QSTP++    K +GG+
Sbjct: 6   FTKPTTKVEPKHLYMNKLIALTIILSTSFFTFSQVLGGRENSQSTPKVAEATKLSGGS 63


>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = -2

Query: 524 RSNIRTRPAKIAPCPNSYSADHC-CIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEA 348
           +  ++TR  K+  C +         + + S    R   + TC   ++TR++ +  RKC+ 
Sbjct: 84  KCKVQTRKCKVQTCKSKVQTRKSKVLTRKSKVQTRKCKVQTCKCKVQTRKSKKQTRKCKV 143

Query: 347 SPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSC 225
              + ++ +    V++ K   + +      TR  + ++R C
Sbjct: 144 QTRKCKVQTCKSKVQIRKSKVQTRKSK-IETRKSKIQTRKC 183


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = -2

Query: 524 RSNIRTRPAKIAPCPNSYSADHC-CIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEA 348
           +  ++TR  K+  C +         + + S    R   + TC   ++TR++ +  RKC+ 
Sbjct: 84  KCKVQTRKCKVQTCKSKVQTRKSKVLTRKSKVQTRKCKVQTCKCKVQTRKSKKQTRKCKV 143

Query: 347 SPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSC 225
              + ++ +    V++ K   + +      TR  + ++R C
Sbjct: 144 QTRKCKVQTCKSKVQIRKSKVQTRKSK-IETRKSKIQTRKC 183


>SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 542 IAFFHSRSNIRTRPAKIAPCPN----SYSADHCCIDKASAFPYRPPSLC 408
           I +F     IR+R   I  C +     +S     +DK  + P+ PPSLC
Sbjct: 285 IVYFWRIQEIRSRVRSICICCSLGCWQFSGYRFYVDKIQSDPFAPPSLC 333


>SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 2/133 (1%)
 Frame = +2

Query: 143 LNFTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELT-CQDGFCNATNALLNAQAPD 319
           +N     N  +  S+  L    D  C  N     +   L+ C +  CN+ NAL N+    
Sbjct: 30  INAPCNSNDALCDSIEALSNSIDAPCNSNDAFCDSIDALSNCIEALCNSINALSNSIDAL 89

Query: 320 LIECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDTGTPRPYLCNN-GRLNMNLDTVQF 496
               D     +       D + +   + ++ D +D        LCN+   L+ ++D +  
Sbjct: 90  SNSIDAFSNSIDALCNSIDALCNS--IDSFCDSIDALSNSIEALCNSINALSNSIDALCN 147

Query: 497 SPDACECSSGYEK 535
           S DA  C   + K
Sbjct: 148 SNDAL-CGDAFSK 159


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
 Frame = -2

Query: 470 SADHCCIDKAS-AFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL--SSPEPVRL 300
           S DHCC  K S +F   P  L   S    +          + +PV   +   S+ + VRL
Sbjct: 184 SLDHCCDQKRSFSFSVSPLVLSCVSSSSSSAHCDTSSTAWQMTPVSTNLHEDSTDDSVRL 243

Query: 299 AKRWWRYKNHPGRSTRLQRWKSRSCL-YTADPSRTVTGSMNNLR 171
            +   R  N    ST     + RS L +    S T TG  N+ R
Sbjct: 244 DQVSRRVDNESATSTERSESEGRSSLRFQMSCSFTDTGESNHPR 287


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
 Frame = -2

Query: 506  RPAKIAPCPNSYSADHCCIDKASAFPYRPPSLCT-CSRMLETRQNLRLRRKCEASPV-RD 333
            RP + + C  SYS     +    +     P LC+ C +  +  + L L +  E     R 
Sbjct: 759  RPFQCSTCSKSYSTSRSLVRHERSHSSEKPYLCSDCGKAFQYSRQLSLHKCLEVDEACRC 818

Query: 332  RILSSPEPVRLAKRWWRYKNHPGRS-TRLQRWKSRSCLYTADPSRTVTGSMNNLRL 168
             +  +P     A     + +HPG+   +  R K +   + +  S T   S  ++ L
Sbjct: 819  TVCDAPF-CSYANLSSHFLSHPGKEPPKCNRCKKKFSSWESFTSHTKIHSERDMYL 873


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,883,836
Number of Sequences: 59808
Number of extensions: 527368
Number of successful extensions: 1280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)