Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k22
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    31   0.85 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   1.5  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   1.5  
X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        30   2.0  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    30   2.0  
Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 395  CVSTYRDLVDDTGTPRPYLCNNGRLNMNLDTVQFSPDACECSSGYEK 535
            CV T +   D T + + + C+   ++  +DTV  S +  EC  GY+K
Sbjct: 1532 CVPTTKKPCDSTQSSKSH-CSESNMSCEVDTVDGSVECKECMGGYKK 1577


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 324 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 229
           +K  A    KAL +L+K SWQV+SL  L   Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 149 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 280
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 149 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 280
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 491 APCPNSYSADHCCIDKASAFPYRPPSLCTCS 399
           AP P++ S    C++ A  FP  P   C+C+
Sbjct: 227 APRPDACSVKDACLNGAKCFPNGPKVFCSCA 257


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 146 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDL 322
           ++  +H +G D       C    +C  D C+         C D  CN++N L+   A  L
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGIL 119

Query: 323 I 325
           I
Sbjct: 120 I 120


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 491 APCPNSYSADHCCIDKASAFPYRPPSLCTCS 399
           AP P++ S    C++ A  FP  P   C+C+
Sbjct: 227 APRPDACSVKDACLNGAKCFPNGPKVFCSCA 257


>Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical
           protein F55F3.4 protein.
          Length = 881

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 723 WRNLRCRFKNNNSLMIIFCKSAYFLMLTESLTFQL*TRLYKLAKRFGMHTGIVRASAVWR 544
           W  +R  FKN   L+I  CK  Y  +L   L     + L+ L + F +H   V  + V++
Sbjct: 812 WGTMRF-FKNTTGLIIAQCKFLYKTLLIGFLKLSFPSELFFLFQNFTLHF-CVLPNLVFQ 869

Query: 543 NSI 535
            SI
Sbjct: 870 TSI 872


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,010
Number of Sequences: 27780
Number of extensions: 393065
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)