Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k22
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01490.1 68416.m00073 protein kinase, putative similar to ATM...    31   0.60 
At1g55010.1 68414.m06283 plant defensin-fusion protein, putative...    31   1.1  
At4g24240.1 68417.m03479 WRKY family transcription factor contai...    29   2.4  
At2g38820.2 68415.m04769 expressed protein contains Pfam profile...    29   3.2  
At2g38820.1 68415.m04768 expressed protein contains Pfam profile...    29   3.2  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    29   4.3  
At5g14480.1 68418.m01694 glycosyl transferase family 17 protein ...    28   5.6  
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    28   5.6  

>At3g01490.1 68416.m00073 protein kinase, putative similar to ATMRK1
           [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 411

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
 Frame = +2

Query: 374 DFVVSQACVSTYRDLVDDTGT---PRPYLCNNGRLNMNLDTVQFSPDACE---CSSGYEK 535
           DF V++   S   D+  +TGT     P + N    N   D   F     E   C   Y  
Sbjct: 271 DFGVARLEASNPNDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPD 330

Query: 536 MLFRQ--TALART-----IPVCIPNRLANLYRRVYN*NVRDSVNMRKYALLQKMI 679
           + F +  +A+ R      IP C P+ LAN+ +R ++ N      M +   + + I
Sbjct: 331 LSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPEKRPEMEEVVAMLEAI 385


>At1g55010.1 68414.m06283 plant defensin-fusion protein, putative
           (PDF1.5) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); similar to antifungal
           protein 4 [Raphanus sativus] gi|1655683|emb|CAA65983
          Length = 80

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 CVTDQQCRDNCVISSAASELTCQDGF 277
           CV D QCRD+C+ +   ++  C  G+
Sbjct: 43  CVNDYQCRDHCINNDRGNDGYCAGGY 68


>At4g24240.1 68417.m03479 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 353

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -2

Query: 521 SNIRTRPAKIAPCPNSYSADHCC----IDKASAFPYRPPSLCTCSRMLETRQNLRLRRKC 354
           S I   P+      NS+ + H C       +S F +  PS  + SR      +  L+R+C
Sbjct: 186 STINFAPSPPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGSRGKPPLSSASLKRRC 245

Query: 353 EASP 342
            +SP
Sbjct: 246 NSSP 249


>At2g38820.2 68415.m04769 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 371 GDFVVSQACVSTY-RDLVDDTGTPRPYLCNNGRLN-MNLDTVQFSPDACECSSGYEKMLF 544
           GDF  S  C++    + ++D        C   R N  +    + S D  ECSSG    + 
Sbjct: 65  GDFEPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGSGTESSDDETECSSGEACEIL 124

Query: 545 RQTALARTIPV 577
           +   L ++I V
Sbjct: 125 KSLVLCKSIRV 135


>At2g38820.1 68415.m04768 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 371 GDFVVSQACVSTY-RDLVDDTGTPRPYLCNNGRLN-MNLDTVQFSPDACECSSGYEKMLF 544
           GDF  S  C++    + ++D        C   R N  +    + S D  ECSSG    + 
Sbjct: 65  GDFEPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGSGTESSDDETECSSGEACEIL 124

Query: 545 RQTALARTIPV 577
           +   L ++I V
Sbjct: 125 KSLVLCKSIRV 135


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 402 LTHA*DTTKSPPAEKM*SKPSAGSHSIKSGACAFSKALVALQKPSWQVNSLAALEITQLS 223
           L H  DT    P E + SK      +++S   +F     ++QK  W V S A  ++T   
Sbjct: 729 LLHNLDTVYCKPPETITSKDDGLVPTLESRQLSFHVEEPSVQKDQWSVLSGATEQVTDGG 788

Query: 222 LHC*SVTHGNR-FNEQ 178
               S   GN+ FN Q
Sbjct: 789 YTNDSAVIGNQNFNRQ 804


>At5g14480.1 68418.m01694 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 387

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 497 KIAPCPNSYSADHC---CIDKASAFPYRPPSLC 408
           K+ P P SYSA H     I+KA ++ Y  P  C
Sbjct: 350 KLGPIPRSYSAVHLPAHLIEKAESYKYLLPGNC 382


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/47 (23%), Positives = 18/47 (38%)
 Frame = -3

Query: 442 PRRSRIVHQVSVRAHACLRHDKISACGENVKQAQCGIAFYQVRSLCV 302
           P++ R   QV        + +   ACGE+     C    Y   + C+
Sbjct: 30  PKKDRTFEQVEAIVRTDAKENACQACGESTNLVSCNTCTYAFHAKCL 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,727
Number of Sequences: 28952
Number of extensions: 348259
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)