Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k21
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.69 
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     28   6.5  
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          28   8.5  

>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 220 KTGPYKIKNLDITPPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRV 399
           K+GP K   +D +P K+T   D ++  V T  N   +  Y G  +    NG  L     +
Sbjct: 404 KSGPVKADVVDASPSKKTDVSDWDVNQVVTWMNNLGLEEYSGTVKQNKVNGAKLKKLAAL 463

Query: 400 E-ESMKTLTVGKEDLLMWGI 456
           + E+ K+L   KED  M GI
Sbjct: 464 KYENAKSLF--KEDWGMDGI 481


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 572 FTNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTR 393
           FT+S   +     + S      SLP    +S+ +SH  L+   S S+ PT SV   S+  
Sbjct: 663 FTSSTIFSTTASINFSSSLRQTSLPTLVFSSTGSSHSALLSSNSNSATPTTSVLPSSTVN 722

Query: 392 V 390
           +
Sbjct: 723 L 723


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 199  PPQRQNAPPPKA-RIKQ*RLPSRLCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVK 26
            PP++  APPP + RI   R  S    S  S  + D+L   +  I P    P D RH  K
Sbjct: 3145 PPRKMRAPPPPSTRIPDVRYRSSSQDSRDSDELPDILPPPKPPIKPKPKVPEDKRHKPK 3203


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
 Frame = -1

Query: 613  CCTCGTQSDCYSAVSPTLCL*PTGRGLRCRE---NTLRCHCPNG 491
            CC  G Q DC       +C  P G    C E   +  RC C  G
Sbjct: 1676 CCFNGCQKDCVLMTDALVCPKPCGPNAECVEFMNSERRCLCKPG 1719


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 334 GYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEEL-IDRWGS 504
           G+ G+  A     G + P+  + E  ++  +   +L M  ++Q CE+G +L ID +G+
Sbjct: 19  GFAGFIAAQLAEHG-VPPSNLIVEITESAVMADPELAMGQLQQLCELGVQLSIDDYGT 75


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 475 GEELIDRWGSDSEECFRDNEGRGQW 549
           G  L   W   +  CFRDN+  G+W
Sbjct: 286 GTLLTSEWVLTAARCFRDNKRAGEW 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,704,504
Number of Sequences: 59808
Number of extensions: 443247
Number of successful extensions: 1435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)