Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k21
         (709 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.3  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   3.1  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   4.1  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   5.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   5.4  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 478  EELIDRWGSDSEECFRDNEGRGQ-WVKGKELVKRQNNNHF 594
            +E+I  +G +  E  R++ G+ + W   K L+K QN N F
Sbjct: 1332 DEMISYYGFEPYE--RNHFGKEKKWTFDKTLIKSQNGNSF 1369


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 357 VCVQRRLAGSQHTRRRIHENADCGQRRFAH-VGYQAAVRGGRRVNRP 494
           +C++  L G  H  R     A C     AH +G+    R  +R +RP
Sbjct: 530 LCIRCGLTG--HKARSCQNEAKCALCGGAHHIGHSECARSAQRCSRP 574


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 214 ARCSAPPQRQNAPPPKARIK 155
           AR S PP  + AP P+A +K
Sbjct: 104 ARPSQPPTTRFAPEPRAEVK 123


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 382 DPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEELIDRWGSDSEE 516
           DP + V + M+ L  G++  +     ++   GEE  D  G + EE
Sbjct: 443 DPESTVSKEMEALREGRQKKVQITFEEEIYKGEE--DYEGEEDEE 485


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = -1

Query: 589 DCYSAVSPTL---CL*PTGRGLRCRENTLRCHC 500
           DC   V P     C   TG  L+C  NT   HC
Sbjct: 831 DCNGNVDPNAVGNCNRTTGECLKCIHNTAGPHC 863


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,145
Number of Sequences: 2352
Number of extensions: 14472
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)