Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k21
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 31 0.61
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 31 0.61
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 31 1.1
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 31 1.1
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 31 1.1
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 31 1.1
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 30 1.9
Z99288-5|CAB16548.2| 336|Caenorhabditis elegans Hypothetical pr... 29 3.3
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 3.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 3.3
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 4.3
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 28 5.7
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 9.9
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 9.9
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 9.9
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 9.9
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 291 NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 446
NHH L R R W++ V GVC++ A + + + CG+ R H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 291 NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 446
NHH L R R W++ V GVC++ A + + + CG+ R H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 224 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 264
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 280 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 320
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 225 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 265
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 246 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 286
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 238 FCTDPFSFARCSAPPQRQNAPPPKA 164
F P FA SAPPQ APPP+A
Sbjct: 86 FAAQPAQFAVQSAPPQPIVAPPPQA 110
>Z99288-5|CAB16548.2| 336|Caenorhabditis elegans Hypothetical
protein ZK262.6 protein.
Length = 336
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -2
Query: 513 FAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIRLVVPLVA 334
FA V+ + A LA L + PH I S R H +GI A ++ + +++
Sbjct: 18 FATLTQLVEFVVAILAFLMNIPHLFILTRKSMRTHITNSLMIGISIADMITLFMII---- 73
Query: 333 NNHVFV 316
NN ++V
Sbjct: 74 NNRIYV 79
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 262 PKETLQKDVEITIVETDYNENVIIGYKGYYQA 357
P++ +Q++ + IVET++++N+II KG A
Sbjct: 2346 PRQIVQENTQ-EIVETEFDDNIIISAKGILHA 2376
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 262 PKETLQKDVEITIVETDYNENVIIGYKGYYQA 357
P++ +Q++ + IVET++++N+II KG A
Sbjct: 2346 PRQIVQENTQ-EIVETEFDDNIIISAKGILHA 2376
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 485 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 384
N P SH +PH S S+ + +++DS V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 485 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 384
N P SH +PH S S+ + +++DS V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 478 EELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSR 657
+E+I+ W D E D++G + +KR NN +C KS ST K+
Sbjct: 46 KEIIEIWSDDDSE---DDDGDVITGSQEAQLKRLNNEEAGSSSCRKSPETAKSTPKVRKP 102
Query: 658 LE 663
+E
Sbjct: 103 VE 104
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 229 DPFSFARCSAPPQRQNAPPPKARIKQ 152
D FS R S+PP R APPPK K+
Sbjct: 1132 DEFSIKR-SSPPCRYYAPPPKYSCKK 1156
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 229 DPFSFARCSAPPQRQNAPPPKARIKQ 152
D FS R S+PP R APPPK K+
Sbjct: 1132 DEFSIKR-SSPPCRYYAPPPKYSCKK 1156
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 339 QGVLPGVCVQR-RLAGSQHTRRRIHENADCGQRRFAHVGYQAAVRG 473
+ ++ G CV R ++ G HT E ADC Q G + ++G
Sbjct: 1239 EAMVDGGCVVRVKVGGGCHTNEECVEGADCVQNSCKCTGNKTELKG 1284
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 229 DPFSFARCSAPPQRQNAPPPKARIKQ 152
D FS R S+PP R APPPK K+
Sbjct: 1132 DEFSIKR-SSPPCRYYAPPPKYSCKK 1156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,861
Number of Sequences: 27780
Number of extensions: 330034
Number of successful extensions: 1121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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