Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k20
(218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 1.0
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 25 1.4
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 1.8
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 1.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 1.8
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 3.1
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 23 4.1
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 23 5.5
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 23 7.2
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 23 7.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 23 7.2
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 22 9.6
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 22 9.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 22 9.6
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 22 9.6
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 15 YFIVTISVLTESITSMHIISSP 80
YF V +S+LT + +H +SSP
Sbjct: 62 YFSVILSILTIACFKIHYVSSP 83
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 211 FNETMQCIEENINPKENSTKVCEN 140
F +QC+EEN ENST + E+
Sbjct: 107 FAPVIQCVEENDFEFENSTIIIED 130
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 24.6 bits (51), Expect = 1.8
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 205 ETMQCIEENINPKENSTKVCENCMQSYIQLNNYYES-LSFDRI-GLDIICMDVIDSVSTL 32
+ + ++ NIN +NS +SY L Y+ + LS++++ L + VIDS+ L
Sbjct: 102 QKINVLQLNINASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSLYGL 161
Query: 31 I 29
+
Sbjct: 162 L 162
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 202 TMQCIEENINPKENSTKVCENCMQS 128
T+QCI E++ P+ STKV E S
Sbjct: 196 TLQCINESVRPQ--STKVKEEATTS 218
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 199 MQCIEENINPKENSTKVCENCMQSY 125
+QCIE N + S+++ C++SY
Sbjct: 16 LQCIESNPSNPNVSSRLLIQCLESY 40
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 205 ETMQC-IEENINPKENSTKVCENCMQSY 125
E M C I + P K C+NCM Y
Sbjct: 180 ENMLCMICSKVQPAAQYCKYCKNCMGRY 207
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 169 KENSTKVCENCMQSYIQLNNYYESLSFDRIGLD 71
+EN + +N +SY +L E LS D + L+
Sbjct: 80 QENKDQELKNIEESYKKLEEKTEHLSDDNVSLE 112
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 208 NETMQCIEENINPK----ENSTKVCENCMQSYIQLNNYYE 101
NET +++ ++ EN+T V EN +++ +YE
Sbjct: 184 NETAYLVKDELSLHAYLGENATSVIENHYNTFVTKQTFYE 223
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 187 EENINPKENSTKVCENCMQSYIQLNNYYESL 95
E ++N K +T +NC Q + +Y ESL
Sbjct: 117 EHSLNAKGINTYSLKNCFQRSGFIGSYEESL 147
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 152 FGTILFGIYILFNT 193
FGT++F YILF+T
Sbjct: 210 FGTLVFCGYILFDT 223
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 135 IQFSHTLVLFSLGFIFSSIHCIVS 206
I H+L L + G +FS++H S
Sbjct: 679 IYLLHSLALLTNGTLFSTVHAAYS 702
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 101 FIIVIQLYVALHTVLTHFGTILFGIYILF 187
FII I V +T F +FG+Y+ F
Sbjct: 136 FIIAIANGVYFVKHITKFSCEIFGLYVAF 164
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 193 CIEENINPKENSTKVCENCMQS----YIQLNNYYESLSFDRIGLDII 65
CI P +T +C+ C+++ Y ++ Y + DR+G+ I
Sbjct: 333 CITSFYRPSV-ATNICDQCLEAIIDFYEPVSRYKFDVMKDRLGVGYI 378
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 114 ITIMNLLVLTE*GWILYAWML 52
IT+ +++ E W L AW L
Sbjct: 1684 ITVFMFIIVFEVSWYLEAWCL 1704
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 181 NINPKENSTKVCENCMQ 131
N+ PK++ +VC N Q
Sbjct: 16 NVTPKQHPARVCSNHWQ 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,733
Number of Sequences: 5004
Number of extensions: 12741
Number of successful extensions: 42
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -