Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k20
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113...    27   2.7  
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539...    26   3.6  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    26   4.7  
04_04_1171 - 31455136-31455482,31455805-31458982                       25   6.3  

>05_03_0425 -
           13808840-13809414,13809552-13809765,13810268-13811317,
           13811616-13811687,13812075-13812334,13812647-13812731
          Length = 751

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 193 CIEENINPKENSTKVCENCMQSYIQLNNY 107
           C +  + P    T +C+N +Q Y Q  NY
Sbjct: 480 CKQGLLGPAAQETGLCKNLLQEYAQKMNY 508


>04_04_1608 -
           34753321-34753332,34753434-34753628,34753868-34753972,
           34754176-34754219,34754645-34754700,34755986-34756146
          Length = 190

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 165 RIVPKCVRTVCRATYS*ITIMNLLVLTE*GWILYAW 58
           R+V  CV+T  +A  S + +  + V+    W+L AW
Sbjct: 4   RVVRSCVQTGLKAVNSVLGLAGMAVILYALWMLRAW 39


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 20  HCYN*CTYRIYNIHAYNIQPYSVKTKRFIIVIQLYVALHTVLTHFGTILFGIYILFN 190
           + Y   +Y + ++  Y +  ++V+   F ++ +L + + + L HF  ILF   I  N
Sbjct: 668 NAYRASSYVVASLVVY-LPFFAVQGLTFAVITKLMLRMESSLLHFWVILFASLITTN 723


>04_04_1171 - 31455136-31455482,31455805-31458982
          Length = 1174

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 129  LCIQFSHTLVLFSLGFIFSSIHCIV 203
            +C+  +H LV    G+ F  +HC V
Sbjct: 981  VCVSVAHGLVYLHSGYDFPVVHCDV 1005


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,545,002
Number of Sequences: 37544
Number of extensions: 62607
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)