Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k20
         (218 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_32566| Best HMM Match : SNARE (HMM E-Value=0.00035)                 27   3.2  
SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)                27   3.2  
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.2  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         27   3.2  
SB_20582| Best HMM Match : DAN (HMM E-Value=1.6)                       26   4.2  
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         25   7.4  
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)                 25   7.4  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_24450| Best HMM Match : zf-C3HC4 (HMM E-Value=4.9)                  25   9.8  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  25   9.8  
SB_40373| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_36732| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 205  ETMQCIEENINPKENSTKVCE 143
            E ++C+E  +N  ENS ++CE
Sbjct: 1693 EAIKCVEAAVNHAENSLEMCE 1713


>SB_32566| Best HMM Match : SNARE (HMM E-Value=0.00035)
          Length = 554

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 214 FFNETMQCIEENINPKENSTKVCENCMQSYIQLNNYYESLS 92
           F N+ M+ +E+N    E   K  ++ +QS  +LN  +  L+
Sbjct: 24  FTNDQMRLVEDNSAIVEQREKEIQSIVQSISELNEIFRDLA 64


>SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)
          Length = 887

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 95  KRFIIVIQLYVALHTVLTHFGTILFGIY 178
           KR +  ++L+ A+ + LTH G +  G++
Sbjct: 612 KRLVTTMELHYAIVSTLTHVGAVKEGVF 639


>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 214 FFNETMQCIEENINPKENSTKVCENCMQSYIQLNNYY 104
           F   TM C+  NI+P  +S   CEN + +    + YY
Sbjct: 431 FVGNTMTCMIANISPSLSS---CENTLNTLRYADRYY 464


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 128 ALHTVLTHFGTILFGIYILFNTLH 199
           ALHTVL    T+L  +Y L   LH
Sbjct: 616 ALHTVLPALHTVLSALYTLLPALH 639



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 128 ALHTVLTHFGTILFGIYILFNTLH 199
           ALHTVL    T+L  +Y L   LH
Sbjct: 574 ALHTVLPSLHTLLPALYTLLPALH 597


>SB_20582| Best HMM Match : DAN (HMM E-Value=1.6)
          Length = 264

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 148 CENCMQSYIQLNNYYES 98
           C NC+QSYI++++  E+
Sbjct: 88  CSNCLQSYIEMDHVREA 104


>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 187 EENINPKENSTKVCEN 140
           E N+N  ENS  VCEN
Sbjct: 79  ENNVNVCENSENVCEN 94


>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 172 PKENSTKVCENCMQSYIQLNNYYESLSFD 86
           PK    KV   C QS ++LN+Y+ +L +D
Sbjct: 71  PKTLKKKVF--CSQSLVELNDYFANLCWD 97


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 71  YYMHGCYRFCKYTN 30
           YY + C ++CKYT+
Sbjct: 173 YYSYACDKYCKYTD 186


>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
          Length = 1102

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 157 TKVCENCMQSYIQLNNYYESLS----FDRIGLDIICMDVIDSVS 38
           T VC NC+  Y  L   Y +++    +  +    IC DV+ +++
Sbjct: 847 TNVCANCLNQYNALQKAYRTVAGAGEYGDLVETSICADVVSAMN 890


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 89   KTKRFIIVIQLYVALHTVLTHFGTILFG 172
            KTK F+I + L   +    TH G + FG
Sbjct: 1233 KTKEFMIKVALSFNISKEETHIGVVAFG 1260


>SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 181 NINPKENSTKVCENCMQSYIQLNNYYESLSFD 86
           NI  KEN     + C+Q +  ++N ++  SFD
Sbjct: 42  NIETKENICFCVQLCIQGFRVVSNTFDFCSFD 73


>SB_24450| Best HMM Match : zf-C3HC4 (HMM E-Value=4.9)
          Length = 253

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 169 KENSTKVCENCMQSYIQLNNYYES 98
           KEN  K C  C+  Y+   N Y +
Sbjct: 158 KENYKKRCPECLARYLDQRNLYNN 181


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 211 FNETMQCIEENINPKENSTKVCENC 137
           F E + C+  ++ P+ N+T V  NC
Sbjct: 340 FEEQVTCVPPSVTPECNATCVGPNC 364


>SB_40373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 145 ENCMQSYIQLNNYYE 101
           E+C Q + +LNNY+E
Sbjct: 53  ESCEQGFCRLNNYFE 67


>SB_36732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 26  YN*CTYRIYNIH-AYNIQPYSVKTKRFIIVIQLY 124
           YN   Y     H AYNIQ Y+  T      IQ+Y
Sbjct: 26  YNIQVYTTLTDHLAYNIQVYTTPTNHLAYNIQVY 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,758,244
Number of Sequences: 59808
Number of extensions: 84112
Number of successful extensions: 292
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 16,821,457
effective HSP length: 50
effective length of database: 13,831,057
effective search space used: 304283254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)