Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k20
(218 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 27 1.8
AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical ... 27 1.8
AF016658-5|AAB66044.1| 186|Caenorhabditis elegans Hypothetical ... 26 4.2
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z81050-7|CAB02853.1| 154|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 25 5.5
U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical pr... 25 5.5
U28732-4|AAB04900.1| 257|Caenorhabditis elegans Hypothetical pr... 25 5.5
U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical pr... 25 7.3
AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical ... 25 7.3
AF024499-7|AAB70358.3| 733|Caenorhabditis elegans Hypothetical ... 25 7.3
Z81558-5|CAB04542.2| 543|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z81459-2|CAB03828.2| 543|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z54216-1|CAA90943.1| 308|Caenorhabditis elegans Hypothetical pr... 25 9.6
AL021503-3|CAA16423.1| 324|Caenorhabditis elegans Hypothetical ... 25 9.6
>Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 172 PKENSTKVCENCMQSYIQLNNYYESLSFD 86
P NST V +NC+Q +I++ + +D
Sbjct: 268 PDRNSTGVWQNCIQMWIRIESVSPDFPYD 296
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 217 FFFNETMQCIEENINPKENSTKVCENCMQSYIQLNNY 107
F +ET QC E N + + CE C + +I Y
Sbjct: 83 FLESETRQCDECNNRVARSMLRQCETCERQFITRTEY 119
>AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 172 PKENSTKVCENCMQSYIQLNNYYESLSFD 86
P NST V +NC+Q +I++ + +D
Sbjct: 268 PDRNSTGVWQNCIQMWIRIESVSPDFPYD 296
>AF016658-5|AAB66044.1| 186|Caenorhabditis elegans Hypothetical
protein B0047.4 protein.
Length = 186
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 12 DYFI---VTISVLTESITSMHIISSPILSKLRDS**LFSCM*LCIQFSHTLVLFSLGFIF 182
DY I +TI V T IT MH IS L S FS + L ++ VL + F F
Sbjct: 124 DYLIDDSITIEV-TVKITKMHGISKKALKSFDKSNEKFSDVVLSVEDKKFFVLRKVSFFF 182
Query: 183 S 185
+
Sbjct: 183 N 183
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
protein F15D4.1 protein.
Length = 1529
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 172 PKENSTKVCENCMQSYIQLNNYYESLSFDRIGLDIICMDVIDSV 41
P+E +++ E M +L + + R GLD +C+D+++ V
Sbjct: 250 PQEEMSQLVEKVMSHVWKLLDLEAAKEQLRAGLDALCIDLLEIV 293
>Z81050-7|CAB02853.1| 154|Caenorhabditis elegans Hypothetical
protein C50B6.9 protein.
Length = 154
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 202 TMQCIEENINPKENSTKVCENCMQSY 125
T+ IE+NI P ENS K+ + +Y
Sbjct: 87 TVHGIEDNIVPVENSKKLMQRMASTY 112
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
protein F15D4.1 protein.
Length = 1529
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 172 PKENSTKVCENCMQSYIQLNNYYESLSFDRIGLDIICMDVIDSV 41
P+E +++ E M +L + + R GLD +C+D+++ V
Sbjct: 250 PQEEMSQLVEKVMSHVWKLLDLEAAKEQLRAGLDALCIDLLEIV 293
>U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical
protein F07C3.10 protein.
Length = 562
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 41 YRIYNIHAYNIQPYSVKTKRFIIVIQLYVALHTVLTHFGTILFGI 175
YR+ I N +P ++K KRF V QL +TVL G+
Sbjct: 495 YRLKAILTMNTKPRNLKIKRF--VQQLIYLAYTVLVFTAVSYLGL 537
>U28732-4|AAB04900.1| 257|Caenorhabditis elegans Hypothetical
protein F45E1.3 protein.
Length = 257
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 146 THFGTILFGIYILFNTLHCFIKKK 217
+HF +L +Y L + L+CF KK
Sbjct: 13 SHFMFLLIAVYTLSSNLNCFWYKK 36
>U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical
protein C05D11.9 protein.
Length = 752
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 24 VTISVLTESITSMHIISSPILSKLRDS 104
+ +S+ E+I H+ LSKLRDS
Sbjct: 254 IKVSIDAENICRFHLSGPKCLSKLRDS 280
>Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical
protein C45B11.4 protein.
Length = 334
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 141 FSHTLVLFSLGFIFSSIHCIVSLKKK 218
FSH+L++F L +IHCI + K
Sbjct: 33 FSHSLLIFFLPMHALTIHCIFNKTPK 58
>AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical
protein Y70G10A.3 protein.
Length = 690
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 119 LYVALHTVLTHFGTILFGIY 178
+Y+A+H VLT FG ++ G++
Sbjct: 215 VYLAIHAVLTSFGPVI-GVF 233
>AF024499-7|AAB70358.3| 733|Caenorhabditis elegans Hypothetical
protein F42G2.6 protein.
Length = 733
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -2
Query: 157 TKVCENCM---QSYIQLNNYYESLSFDRIGLDIICMDV 53
TK C C+ Y+ + ++E D G IICMD+
Sbjct: 136 TKDCGCCLFHKDVYLTNHIFFEKSHRDEYGQTIICMDI 173
>Z81558-5|CAB04542.2| 543|Caenorhabditis elegans Hypothetical
protein F59D12.4 protein.
Length = 543
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 107 IVIQLYVALHTVLTHFGTILFGIYILFNTL 196
IVI+ Y + T HF + + I++LF+ L
Sbjct: 509 IVIEPYPVISTSRKHFHSFVIVIFMLFSAL 538
>Z81459-2|CAB03828.2| 543|Caenorhabditis elegans Hypothetical
protein F59D12.4 protein.
Length = 543
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 107 IVIQLYVALHTVLTHFGTILFGIYILFNTL 196
IVI+ Y + T HF + + I++LF+ L
Sbjct: 509 IVIEPYPVISTSRKHFHSFVIVIFMLFSAL 538
>Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical
protein D1046.2 protein.
Length = 403
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 175 NPKENSTKVCENCMQSYI 122
NPK S CENC +I
Sbjct: 114 NPKRKSLHSCENCGMEFI 131
>Z54216-1|CAA90943.1| 308|Caenorhabditis elegans Hypothetical
protein T24H10.1 protein.
Length = 308
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 199 MQCIEENINPKENSTKVCENCMQSYIQLNNYYESLSFDRIGLDII 65
M +EE + + +C N M+S Q N + LS + ++II
Sbjct: 1 MSALEETQSLCKQVDDICNNGMESVEQCNKLLDQLSKIPMSIEII 45
>AL021503-3|CAA16423.1| 324|Caenorhabditis elegans Hypothetical
protein Y68A4A.6 protein.
Length = 324
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -2
Query: 124 IQLNNYYESLSFDRIGLDIICMDVIDSVSTLIV 26
I L ++ + FD++G ++ M ++D V+T ++
Sbjct: 243 ISLPFLFQLVVFDKLGTFLMAMTIVDVVTTPLI 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,454,441
Number of Sequences: 27780
Number of extensions: 71764
Number of successful extensions: 273
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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