Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k20
         (218 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.026
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   0.99 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   5.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   5.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   9.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   9.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   9.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   9.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 0.026
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 IEENINPKENSTKVCENCMQSYIQLNNYYE 101
           IEE+ N  ++ T++  N +Q    LNN Y+
Sbjct: 567 IEESNNMTDSFTRIANNTIQELYTLNNMYK 596


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 0.99
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 152 FGTILFGIYILFNTLHC 202
           FGTI+  +++ F+ L C
Sbjct: 109 FGTIMCDLWVSFDVLSC 125


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 153 LVLFSLGFIFSSIHCIV 203
           +V+F  GF+ + I CIV
Sbjct: 41  VVIFVTGFVGNIITCIV 57


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 193 CIEENINPKENSTKVCENCMQSYIQL 116
           C++E  N  +   +V E+C +S+  L
Sbjct: 515 CLKEKENEIDFKIEVTEDCNKSFNDL 540


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 133 QSYIQLNNYYESLSFD 86
           ++Y  L + YE+LS+D
Sbjct: 116 ENYNLLEDIYETLSYD 131


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +2

Query: 50  YNIHAYNIQPYSV 88
           YN+  +N  P+S+
Sbjct: 466 YNVELHNSSPFSI 478


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +2

Query: 50  YNIHAYNIQPYSV 88
           YN+  +N  P+S+
Sbjct: 504 YNVELHNSSPFSI 516


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 45  ESITSMHIISSP 80
           ESITS++  SSP
Sbjct: 406 ESITSVNSTSSP 417


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 135 IQFSHTLVLFSLGFIFSS 188
           I F H++ L  + FI+S+
Sbjct: 7   IMFIHSIFLILIIFIYSN 24


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 135 IQFSHTLVLFSLGFIFSS 188
           I F H++ L  + FI+S+
Sbjct: 7   IMFIHSIFLILIIFIYSN 24


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 179 ILFNTLH 199
           +LFNTLH
Sbjct: 11  VLFNTLH 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,747
Number of Sequences: 438
Number of extensions: 934
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)