Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k20
         (218 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransfer...    28   0.73 
At1g65000.1 68414.m07367 expressed protein                             28   0.97 
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   1.3  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    26   3.0  
At1g09700.1 68414.m01089 double-stranded RNA-binding domain (DsR...    26   3.9  
At5g15830.1 68418.m01852 bZIP transcription factor family protei...    25   5.2  
At3g26570.2 68416.m03317 phosphate transporter family protein co...    25   5.2  
At3g26570.1 68416.m03316 phosphate transporter family protein co...    25   5.2  
At2g15500.1 68415.m01774 hypothetical protein                          25   5.2  
At1g29950.2 68414.m03661 expressed protein                             25   6.8  
At1g29950.1 68414.m03660 expressed protein                             25   6.8  
At2g21720.1 68415.m02584 hypothetical protein contains Pfam prof...    25   9.0  
At2g12480.1 68415.m01349 serine carboxypeptidase S10 family prot...    25   9.0  

>At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 342

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 68  NIQPYSVKTKRFIIVIQLYVALHTVLTHFGTILFGIYILFNTLHCFIK 211
           NIQ Y +    F I + ++V L  +  +   +   + ++FN+LH F++
Sbjct: 109 NIQNYKIPIWLFAIKVVIFVVLLQMYEYKQYLSPALLLVFNSLHIFLE 156


>At1g65000.1 68414.m07367 expressed protein
          Length = 83

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 169 KENSTKVCENCMQSYIQLNNYYESLSF 89
           K+   K+C+ C QSY  L+N   S  F
Sbjct: 3   KKEMEKLCQRCKQSYTDLSNETSSCRF 29


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 190 IEENINPKENSTKVCENCMQSYIQLNNYYESLSFDRI 80
           ++ENI+   N  K+C+ C+ + I   N+Y  +  D I
Sbjct: 691 LDENIDRDYNENKLCQACI-TPIYFGNFYSCMQCDFI 726


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
            resistance protein-related low similarity to disease
            resistance protein RPP4 [Arabidopsis thaliana]
            GI:20270890; contains Pfam profiles PF00412: LIM domain,
            PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 190  IEENINPKENSTKVCENCMQSYIQLNNY 107
            +EE +NP  +  K C++ ++  I +N Y
Sbjct: 1229 VEEEVNPPLSKCKDCKSAIEDGISINAY 1256


>At1g09700.1 68414.m01089 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif; supporting
           cDNA gi|12247456|gb|AF276440.1|AF276440
          Length = 419

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 208 NETMQCIEENINPKENSTKVCENCMQSYIQLNNY 107
           +E  QC+ + ++     T +C+N +Q Y Q  NY
Sbjct: 86  SELSQCVSQPVH----ETGLCKNLLQEYAQKMNY 115


>At5g15830.1 68418.m01852 bZIP transcription factor family protein
           similar to common plant regulatory factor 7 GI:9650828
           from [Petroselinum crispum]; contains Pfam profile:
           PF00170 bZIP transcription factor
          Length = 186

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 178 INPKENSTKVCENCMQSYIQLNNYYESLS 92
           + P  +S+ +     Q Y  LNNYY +L+
Sbjct: 1   MQPNYDSSSLNNMQQQDYFNLNNYYNNLN 29


>At3g26570.2 68416.m03317 phosphate transporter family protein
           contains Pfam profile: PF01384 phosphate transporter
           family
          Length = 587

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 125 VALHTVLTHFGTILFGIYILFN 190
           +AL T L  + T+LFG Y+ +N
Sbjct: 150 LALKTKLLSYATLLFGFYMAWN 171


>At3g26570.1 68416.m03316 phosphate transporter family protein
           contains Pfam profile: PF01384 phosphate transporter
           family
          Length = 613

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 125 VALHTVLTHFGTILFGIYILFN 190
           +AL T L  + T+LFG Y+ +N
Sbjct: 176 LALKTKLLSYATLLFGFYMAWN 197


>At2g15500.1 68415.m01774 hypothetical protein 
          Length = 132

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 172 PKENSTKVCENCMQSYIQLNNYYESLSFDRIGLDIICMDVID 47
           P E S K   +  QSY    + + + S   + +  IC DVID
Sbjct: 61  PYEQSLKEIADKFQSYNFRGSGFVAFSTQNVTISGICKDVID 102


>At1g29950.2 68414.m03661 expressed protein
          Length = 251

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +2

Query: 59  HAYNIQPYSVKTKRFIIVIQLY----VALHTVLTH 151
           H   +QP +V  K F+I  Q Y    V  H  LTH
Sbjct: 41  HGVELQPSAVCPKNFVIFDQTYDRSQVMYHPELTH 75


>At1g29950.1 68414.m03660 expressed protein
          Length = 251

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +2

Query: 59  HAYNIQPYSVKTKRFIIVIQLY----VALHTVLTH 151
           H   +QP +V  K F+I  Q Y    V  H  LTH
Sbjct: 41  HGVELQPSAVCPKNFVIFDQTYDRSQVMYHPELTH 75


>At2g21720.1 68415.m02584 hypothetical protein contains Pfam
           profile: PF04842 plant protein of unknown function
           (DUF639)
          Length = 703

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 119 LYVALHTVLTHFGTIL-FGIYILFNTLHCFI 208
           + +AL  VL  F  ++ F ++I+F  ++CF+
Sbjct: 635 MVMALMLVLASFFAVVPFKLFIIFGIVYCFV 665


>At2g12480.1 68415.m01349 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II precursor
           (Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
           vulgare]
          Length = 442

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 15  YFIVTISVLTESITSMHII 71
           Y IV  SVLTE I S HI+
Sbjct: 260 YAIVESSVLTEYINSYHIL 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,987,721
Number of Sequences: 28952
Number of extensions: 58787
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,070,560
effective HSP length: 52
effective length of database: 10,565,056
effective search space used: 211301120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)