Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k19
         (226 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VUU3 Cluster: Putative Abi-alpha protein; n=2; Strept...    34   0.71 
UniRef50_Q5CHN1 Cluster: Putative uncharacterized protein; n=1; ...    33   1.2  
UniRef50_Q6F9X6 Cluster: Putative transcriptional regulator; n=1...    31   3.8  

>UniRef50_A4VUU3 Cluster: Putative Abi-alpha protein; n=2;
           Streptococcus suis|Rep: Putative Abi-alpha protein -
           Streptococcus suis (strain 05ZYH33)
          Length = 298

 Score = 33.9 bits (74), Expect = 0.71
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 23  LMDFIVLYMLPFEIYVPSDGLGNRKCGYGNFWKSSAYCLVE*NYKFIYVYRYLV 184
           ++DF  LY+      VPS  L + +CGY +      +CL +  YKF+ ++ Y +
Sbjct: 244 IIDFRALYLDQGNCLVPSPDLESFECGYSD--TIYYHCLYKTKYKFLIIFLYFL 295


>UniRef50_Q5CHN1 Cluster: Putative uncharacterized protein; n=1;
           Cryptosporidium hominis|Rep: Putative uncharacterized
           protein - Cryptosporidium hominis
          Length = 76

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 211 RKKFYLVINN*ISIHVNKFIILFY*TVSRRF 119
           +KKF L+  N I+IH+NKF  L + ++S  F
Sbjct: 39  KKKFVLIKQNNITIHINKFFFLLFFSLSNFF 69


>UniRef50_Q6F9X6 Cluster: Putative transcriptional regulator; n=1;
           Acinetobacter sp. ADP1|Rep: Putative transcriptional
           regulator - Acinetobacter sp. (strain ADP1)
          Length = 204

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 146 ILLNSKQTISKSFHSHISYFPVHHSEHRSRT 54
           +LL   Q   KSF  H+++F +HH  H  RT
Sbjct: 69  MLLEMIQDKQKSFPEHLAFFMLHHLHHPERT 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,475,106
Number of Sequences: 1657284
Number of extensions: 3492557
Number of successful extensions: 7348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7344
length of database: 575,637,011
effective HSP length: 53
effective length of database: 487,800,959
effective search space used: 10243820139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)