Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k19
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   1.8  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    24   3.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    24   3.1  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    23   7.2  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   7.2  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    23   7.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    22   9.5  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    22   9.5  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    22   9.5  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 104 SHISYFPVHHSEHRSRTEACIAQ 36
           S ISY P+ H EH +    C +Q
Sbjct: 134 SDISYVPIPHKEHSNWPVHCSSQ 156


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 92  RKCGYGNFWKSSAYCLVE*NYKFIYVYRYLVVYD 193
           +K    NF   +AY L+E N K+ ++ +  VV D
Sbjct: 21  KKSKIDNFRSRAAYKLIELNSKYRFINKEDVVID 54


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 151 ILFY*TVSRRFPKVSIATFPISQSITRNIDL 59
           +LF  ++ R  PK  I   P++ S +RN+ L
Sbjct: 1   MLFSRSILRGMPKAGIPKSPLALSASRNLRL 31


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 137 NSKQTISKSFHSHISYFPVHHSEH 66
           NSK     SF +HIS   + HS++
Sbjct: 739 NSKALTKDSFSTHISVSSLLHSDN 762


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -1

Query: 193  VINN*ISIHVNKFIILFY*TVSRRFPKVSIATFPISQSITRNIDLERKHV*HNKIHQE 20
            +I N  SI    F  +FY T + +  K+ +      +   R+  L  KH  ++K+  +
Sbjct: 828  IIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDD 885


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 50  LPFEIYVPSDGLGNRKCGYGNFW 118
           +PF+++   DG G    G G  W
Sbjct: 156 VPFKLFDNGDGKGTIAGGQGTMW 178


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 152 NSILLNSKQTISKSFHSHISYFPVHHSEHRSRTEACI 42
           NS++ +   T + +F +  +  PVH ++ R R  A +
Sbjct: 380 NSLINDRSSTTTPTFVNSEASSPVHKNKRRRRIYAAL 416


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 81  DWEIGNVAMETFG 119
           DW+ G ++ ETFG
Sbjct: 913 DWDDGPISAETFG 925


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 45  TCFRSRSMFRVMDWEIGNVAMETFGNRLLTV**NRII---NLFTCID 176
           T +  ++ FR+++WEI        GN LL     R+I   N F C D
Sbjct: 66  THYYLKNCFRILEWEI---VSHVGGNELLIN--RRVIDVNNFFICQD 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,777
Number of Sequences: 5004
Number of extensions: 16841
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)