Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k19
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160...    29   0.67 
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980...    28   0.88 
04_03_0489 + 16503325-16503747,16503916-16503978                       26   4.7  
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925...    26   4.7  
01_06_1476 + 37640278-37642551                                         26   4.7  
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537...    25   8.2  

>08_01_0194 -
           1603702-1603782,1603970-1604062,1604203-1604328,
           1604403-1604513,1604989-1605108,1605665-1605757,
           1606024-1606157,1606503-1606530,1606821-1607075,
           1607167-1607401,1608147-1608193
          Length = 440

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 176 IDTRK*IYNSILLNSKQTISKSFHSHI 96
           IDTR+ +Y +I+L+   T+ K FH  +
Sbjct: 333 IDTRRDLYKNIVLSGGSTMFKDFHKRL 359


>02_04_0473 +
           23197294-23197340,23197443-23197680,23197792-23198016,
           23198616-23198762,23198827-23198961,23199415-23199507,
           23199925-23200044,23200303-23200413,23200486-23200611,
           23200731-23200829,23201024-23201104
          Length = 473

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 176 IDTRK*IYNSILLNSKQTISKSFHSHI 96
           IDTR+ +Y +I+L+   T+ K FH  +
Sbjct: 364 IDTRRALYKNIVLSGGSTMFKDFHRRL 390


>04_03_0489 + 16503325-16503747,16503916-16503978
          Length = 161

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +1

Query: 25  DGFYCAIHASVRDLC----SE*WTGK*EMWLWK 111
           D  YCA+ A  RDL     S  W G    W W+
Sbjct: 96  DSRYCAVIAHARDLLPPHRSAGWVGDGREWRWR 128


>02_05_0752 +
           31491462-31491921,31492177-31492271,31492346-31492573,
           31493070-31493157,31493275-31493326,31493985-31494050,
           31494382-31494536,31494633-31494703,31494820-31495017,
           31495103-31495144,31496223-31496324,31496514-31496603,
           31496708-31496783,31497299-31497395,31497488-31497557,
           31497676-31497852,31498156-31498239,31498971-31499093,
           31500143-31500226,31500318-31500502,31500592-31500730,
           31500841-31500900,31500969-31501040,31501136-31501197,
           31501839-31501945,31501984-31502058,31502800-31503248
          Length = 1168

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 51  FRSRSMFRVMDWEIGNVAMETF 116
           FR+  M RV+ WE GN+  + F
Sbjct: 115 FRNEFMRRVVPWEKGNLTWQNF 136


>01_06_1476 + 37640278-37642551
          Length = 757

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 107 HSHISYFPVHHSEHRSRTEACIAQ*NP 27
           H   S  P HHS+HR    A +A   P
Sbjct: 37  HMDKSAMPAHHSDHREWYSATVATLTP 63


>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
            26954069-26954240,26954494-26954567,26954667-26954763,
            26954888-26955000,26955168-26955283,26955960-26956017,
            26956512-26956664,26957377-26957460,26957579-26957734,
            26958401-26958469,26959212-26959300,26959398-26959560,
            26959740-26959874,26959950-26960055,26960143-26960237,
            26960508-26960753,26961567-26961635,26961772-26961837,
            26961838-26961983,26962348-26962449,26962752-26962899,
            26964183-26964239,26964315-26964445,26964535-26964623,
            26964694-26965007,26965084-26965176,26966504-26966578,
            26966834-26966895,26967254-26967356,26967518-26967676,
            26967790-26967930,26967981-26968084,26968146-26968260,
            26969017-26969169,26969256-26969417
          Length = 1646

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 118  PKVSIATFPISQSITRNIDL 59
            PK   A  P+S+++T NID+
Sbjct: 1093 PKAFFANMPLSKTLTMNIDV 1112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,344,733
Number of Sequences: 37544
Number of extensions: 87668
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)