Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k19
         (226 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)                 26   4.2  
SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)                      25   9.7  
SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)                     25   9.7  

>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
          Length = 856

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 50  LPFEIYVPSDGLGNRKCGYGNFWKSSA 130
           LPFE+    + + +++C + + W S+A
Sbjct: 151 LPFEVSFSPENIPSQRCSWNSVWGSAA 177


>SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)
          Length = 397

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  WILLCYTC-FRSRSMFRVMDWEIGNVAMETFGNRLLT 134
           WI +C+TC F +        W +  V +  FGNR L+
Sbjct: 11  WIFICFTCIFLNLEQVFKDSWVLSVVEL-PFGNRHLS 46


>SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)
          Length = 291

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 173 DTRK*IYNSILLNSKQTISKSFHSHISYFPVHHSEHRSRTEACIAQ*N 30
           +TR  +Y +   N++ T+ K+   HI+   V+ S+H +RT    AQ N
Sbjct: 150 NTRTTVYKA-QRNTRTTVYKA--QHITRTTVYMSQHNTRTRVYKAQHN 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,565,393
Number of Sequences: 59808
Number of extensions: 110301
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 16,821,457
effective HSP length: 52
effective length of database: 13,711,441
effective search space used: 301651702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)