Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k19
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    29   0.59 
Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical p...    25   5.5  
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    25   5.5  
Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 29  DFIVLYMLPFEIYVPSD----GLGNRKCGYGNFWKS 124
           DF+  Y   FEIYVP +    G    KC Y  FW +
Sbjct: 140 DFVFFYCCDFEIYVPKNCLALGCVMNKC-YKTFWST 174


>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -3

Query: 206 KVLFSHKQLNIDTRK*IYNSILLNSKQTISKSFHSHISYFPVHHSEHRSRTEACIAQ*NP 27
           K  F ++ L  DT+K + N +L   K   S+S+   + +   +HSE+ +  E CI    P
Sbjct: 286 KFYFLNQNLQ-DTQKNVEN-VLAGCKYMNSRSYCEIVDWS--YHSENPNEFEICIPDSQP 341

Query: 26  SG 21
           SG
Sbjct: 342 SG 343


>Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical
           protein F49E12.6 protein.
          Length = 600

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 118 PKVSIATFPISQSITRNIDLERKHV*HN 35
           P VS  TFP   S   N+D++ KH+  N
Sbjct: 529 PLVSQMTFPQESSQLHNLDVKPKHLMSN 556


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +1

Query: 16  MIPDGFYCAIHASVRDLCSE*WTGK*EMWLWKLLEIVCLLFSRIEL*IYLRVSIFSCL*L 195
           +I +G  CA    + +  S  ++ +  ++L  L+ I+ ++F+R  + I L  S+FS    
Sbjct: 9   IITNGSSCASEFEIGERTS--YSSRLNIFLHNLVIILTMVFTRKAVKIMLSKSMFSTTTR 66

Query: 196 NKTFY 210
           N  FY
Sbjct: 67  NLLFY 71


>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 206 KVLFSHKQLNIDTRK*IYNSILLNSKQ 126
           ++L + +Q  I++R+ +YNSIL  + Q
Sbjct: 315 RLLLTEEQNTIESRRFLYNSILKQNHQ 341


>AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical
           protein F22F7.6 protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -3

Query: 140 LNSKQTISKSFHSHISYFPV-HHSEH 66
           L      SK+F  H  +FP  HH EH
Sbjct: 202 LKQSMAYSKTFEFHHRFFPQGHHIEH 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,153,248
Number of Sequences: 27780
Number of extensions: 91316
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)