Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k19
(226 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60900.1 68418.m07640 lectin protein kinase family protein co... 27 1.7
At1g20360.1 68414.m02540 F-box protein-related contains weak hit... 27 1.7
At1g07280.1 68414.m00774 expressed protein 27 1.7
At2g43050.1 68415.m05342 pectinesterase family protein contains ... 26 3.9
At3g60400.1 68416.m06755 mitochondrial transcription termination... 25 5.1
At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autopha... 25 5.1
At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi... 25 6.8
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 25 6.8
At1g63600.1 68414.m07189 protein kinase-related low similarity t... 25 6.8
At2g17036.1 68415.m01966 F-box family protein ; similar to SKP1... 25 9.0
>At5g60900.1 68418.m07640 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 748
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +2
Query: 53 PFEIYV-PSDGLGNRKCGYGN 112
PF I P D LGN CGY N
Sbjct: 269 PFYISTGPDDALGNMACGYNN 289
>At1g20360.1 68414.m02540 F-box protein-related contains weak hit to
Pfam profile PF00646: F-box domain
Length = 302
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -3
Query: 128 QTISKSFHSHISYFPVHHSEHRSRTEACIAQ*NPSGIILLLC 3
++ +++ +SHIS P+ SE+ SR E+ + +P G ++C
Sbjct: 25 KSTNRTINSHISD-PLFESEYFSRLESSLYNLSPGGARYVMC 65
>At1g07280.1 68414.m00774 expressed protein
Length = 552
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 131 KQTISKSFHSHISYFPVHHSEHRSRTEACIAQ*NPS 24
K S +FH +++ VHHS S+T A A +PS
Sbjct: 4 KVATSSTFHQWVAHPIVHHSSSLSQTLASSAVSSPS 39
>At2g43050.1 68415.m05342 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 518
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 146 ILLNSKQTISKSFHSHISYFPVHHSEHRSRTE 51
I NS +IS + +SH S F H S S+T+
Sbjct: 28 IQTNSAVSISSNSNSHFSRFSRHRSSPSSKTK 59
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 134 SKQTISKSFHSHISYFPVHHSE 69
S T SKS H+SY P++ E
Sbjct: 77 SVPTFSKSLRKHLSYHPINEFE 98
>At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autophagy
9 protein GI:19912149 from [Arabidopsis thaliana]
Length = 866
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 26 MDFIVLYMLPFEIYVPSDGLGNRKCG 103
+ FI+ + F +YV +GL N KCG
Sbjct: 101 LGFIICFSGFFLLYVDWNGLQNAKCG 126
>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 709
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 146 ILLNSKQTISKSFHSHISYFPVHHSEHRSR 57
+LL +S FHS YF HH H R
Sbjct: 2 LLLQQPPLVSTRFHS--LYFLTHHHHHHHR 29
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 152 NSILLNSKQTISKSFHSHISYFPVHHSEHR 63
NS++ QT+S +F I+ P H S +R
Sbjct: 349 NSVMQQGGQTVSLNFGKRINEGPPHQSMNR 378
>At1g63600.1 68414.m07189 protein kinase-related low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 302
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 149 SILLNSKQTISKSFHSHISYFPVHHSEHRSRT 54
S+L ++ TIS+S H H+S F S++ ++T
Sbjct: 16 SLLFSTNLTISESDHIHMSTFCNQFSDNFTQT 47
>At2g17036.1 68415.m01966 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 428
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 158 IYNSILLNSKQTISKSFHSHISYFPVH 78
++++I ++ K T+ K S +YFP H
Sbjct: 93 VWDNIYVSRKMTLLKPLSSSRNYFPQH 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,716,885
Number of Sequences: 28952
Number of extensions: 80355
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,070,560
effective HSP length: 54
effective length of database: 10,507,152
effective search space used: 210143040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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