Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k18
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 184 5e-47
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 183 6e-47
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 183 6e-47
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 177 6e-45
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 171 3e-43
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 128 2e-30
08_02_0383 - 16539472-16539633,16543044-16543205 44 5e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.011
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.6
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.8
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 3.7
11_06_0289 - 21969248-21973516 28 5.0
11_06_0185 + 21018045-21022307 28 5.0
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 27 6.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 8.7
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 184 bits (447), Expect = 5e-47
Identities = 95/151 (62%), Positives = 109/151 (72%), Gaps = 12/151 (7%)
Frame = +3
Query: 21 MADQTEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 185
MA+QTE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLS 344
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H+S
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 345 PCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
PCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 PCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 183 bits (446), Expect = 6e-47
Identities = 95/153 (62%), Positives = 112/153 (73%), Gaps = 14/153 (9%)
Frame = +3
Query: 21 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 185
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 338
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 339 LSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 183 bits (446), Expect = 6e-47
Identities = 95/153 (62%), Positives = 112/153 (73%), Gaps = 14/153 (9%)
Frame = +3
Query: 21 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 185
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 338
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 339 LSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 177 bits (430), Expect = 6e-45
Identities = 84/133 (63%), Positives = 100/133 (75%), Gaps = 4/133 (3%)
Frame = +3
Query: 51 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 218
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 219 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 398
+ G KM RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CR
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCR 121
Query: 399 PLSKTVRFNVLKV 437
PLSKTVRFNV+KV
Sbjct: 122 PLSKTVRFNVIKV 134
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 171 bits (416), Expect = 3e-43
Identities = 95/168 (56%), Positives = 112/168 (66%), Gaps = 29/168 (17%)
Frame = +3
Query: 21 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 185
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 302
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 303 ---RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 128 bits (310), Expect = 2e-30
Identities = 63/100 (63%), Positives = 75/100 (75%), Gaps = 5/100 (5%)
Frame = +3
Query: 21 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 185
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 305
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 219 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 398
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 399 PLSKTVRFNVLKV 437
PLSK + V ++
Sbjct: 62 PLSKRKHWVVAEI 74
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.011
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 219 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 398
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 399 PLSKTVRF 422
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 173 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 42
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 153 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 299
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 110 VTHVLPLHATFPVQENGGLFLKRFLCL 30
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 231 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 365
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 231 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 365
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 72 NRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGR 215
N G ++RH ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 408 WTKVCIRRSLQYHQSPRP*SKATNVRTCSCAVSRTY 301
W C RR Y +SP P + R+ S + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,311
Number of Sequences: 37544
Number of extensions: 267721
Number of successful extensions: 603
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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