Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k18
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   205   2e-53
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.84 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  205 bits (500), Expect = 2e-53
 Identities = 96/142 (67%), Positives = 113/142 (79%), Gaps = 3/142 (2%)
 Frame = +3

Query: 21  MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 191
           M++QTE+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ 
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 192 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 371
           GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  G
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120

Query: 372 DIVTIGECRPLSKTVRFNVLKV 437
           D+VTIGECRPLSKTVRFNVLKV
Sbjct: 121 DLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 431 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 327
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 93   SSCHLSCSGKRWPVSETLSLSD 28
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 93   SSCHLSCSGKRWPVSETLSLSD 28
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical
           protein R06B9.1 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 105 ACPSSSCHLSCSGKRWPVSETLSLSDPP 22
           AC   S  LS     WP S TL L+ PP
Sbjct: 92  ACKDGSNELSAGDYVWPFSYTLPLNVPP 119


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 233 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 352
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,665
Number of Sequences: 27780
Number of extensions: 224986
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)