Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k18
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   202   1e-52
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           196   5e-51
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           193   7e-50
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.34 
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.59 
At4g26980.1 68417.m03882 expressed protein                             27   5.5  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.5  
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos...    27   9.6  
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos...    27   9.6  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   9.6  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  202 bits (492), Expect = 1e-52
 Identities = 99/144 (68%), Positives = 113/144 (78%), Gaps = 5/144 (3%)
 Frame = +3

Query: 21  MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 185
           MA+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 365
           FTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119

Query: 366 IGDIVTIGECRPLSKTVRFNVLKV 437
            GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  196 bits (479), Expect = 5e-51
 Identities = 95/144 (65%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
 Frame = +3

Query: 21  MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 185
           MA+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 365
           FTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 366 IGDIVTIGECRPLSKTVRFNVLKV 437
            GD + IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  193 bits (470), Expect = 7e-50
 Identities = 96/144 (66%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
 Frame = +3

Query: 21  MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 185
           MA+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 186 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 365
           FTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 366 IGDIVTIGECRPLSKTVRFNVLKV 437
            GD V IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHVIIGQCRPLSKTVRFNVLKV 143


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 225 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 401
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 402 LSKTVRFNVLKV 437
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 213 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 392
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 393 CRPLSK 410
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +3

Query: 213 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 392
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 393 CRPLSKTVRFNVLKV 437
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 66  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 194
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 135 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 239
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 210 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 326
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At5g50640.1 68418.m06274 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 23  GGSDRESVSETGHRFPEQERWHEEEG 100
           GG  R+S+S +GH F  +++  E EG
Sbjct: 5   GGPSRKSLSFSGHSFQGRKKASENEG 30


>At5g50530.1 68418.m06258 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 23  GGSDRESVSETGHRFPEQERWHEEEG 100
           GG  R+S+S +GH F  +++  E EG
Sbjct: 5   GGPSRKSLSFSGHSFQGRKKASENEG 30


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 233  SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 358
            S+ EDA    DP  +P++   I+    T +EH+   + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,651
Number of Sequences: 28952
Number of extensions: 211841
Number of successful extensions: 492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)