Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k17
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.33 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.33 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 618 WKWMLSLGWLVYGIGDLMI 562
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 618 WKWMLSLGWLVYGIGDLMI 562
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 293 SIWFRCR*DRSTGVEKG*SNVEETVPG 213
           ++W  C+   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 293 SIWFRCR*DRSTGVEKG*SNVEETVPG 213
           ++W  C+   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNS-VTVQSLPNVSSIIKGYRDAYLVNLEAVV 382
           F  L  +L G     N  VT+  LPNV+S +     A   NLE VV
Sbjct: 197 FVSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 521 HQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVL 640
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 278


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 521 HQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVL 640
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 170


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +3

Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 656
           P  P    +  RSS+P+   PT P +   ++    P  K   P
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHKPNRKPRTP 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,988
Number of Sequences: 336
Number of extensions: 2932
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)