Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k17
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.48
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.64
11_06_0610 - 25449085-25453284 30 2.0
02_04_0452 + 23044190-23045227 29 2.6
12_02_0329 + 17585046-17585561 29 4.5
04_01_0041 - 464695-464850,467485-469029 29 4.5
01_05_0227 - 19512866-19514983 29 4.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 7.9
03_02_0253 - 6839543-6839623,6839725-6839805,6839935-6839976,684... 28 7.9
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 7.9
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 522 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 635
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 540 AISATSTRSSNPRFHTPTTP 599
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAP 656
PP+P A+S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 475 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 597
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>12_02_0329 + 17585046-17585561
Length = 171
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 559 VDVAEIAGEGGLMHKGETANSNARG*RGGQHIASFNCDVSSSPTKVNCDGYFEARGG 389
V VA+ +G+G K TA S G GG+ A++ C + C G+ +GG
Sbjct: 91 VIVADASGDGSAAPKSGTAGSTHPGPEGGRSAAAWLCRSHNH----RCHGHGGGKGG 143
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 239 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 415
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 416 TVD 424
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 456 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 364
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLT 608
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>03_02_0253 -
6839543-6839623,6839725-6839805,6839935-6839976,
6840604-6840695,6840789-6840858,6841645-6841737,
6841926-6842002,6842614-6842800
Length = 240
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 437 TADVTVEGGNVL----ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRL 604
TAD V V+ +TP +R I G + H AT+ L N +KS +
Sbjct: 116 TADQVVVHDGVIREKPSTPEEARKFIKGYSESHAATIGSVL-VTN--VKSGARKEGWDKA 172
Query: 605 NIHFHQSPDAVLEGI 649
++FH+ PD V+E +
Sbjct: 173 EVYFHKIPDEVVESL 187
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 656
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,323
Number of Sequences: 37544
Number of extensions: 386662
Number of successful extensions: 1388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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