Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k17
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 35 0.053
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 29 2.6
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 29 2.6
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.5
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 29 4.6
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5) 28 6.1
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 28 6.1
SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7) 28 8.0
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 8.0
SB_24975| Best HMM Match : ET (HMM E-Value=1) 28 8.0
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 409 TRHS*PLLDYC*RHS*RRQCAGHPFILSHYYWRSRPY--ASSHPPLR 543
T++ LL YC RR AGHPF+L Y + R Y +S PLR
Sbjct: 91 TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 469 AGHPFILSHYYWRSRPYASSH------PPLRSRLHQPDHQIPDSIHQ 591
+ HP + H+ +S P+ SSH PP + LH+PD+ + HQ
Sbjct: 289 SAHPSQVPHH--KSEPHTSSHKPQLWVPPTQQSLHKPDNPHKNPYHQ 333
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
P+PA + T T+ + P HTPTTP T+ + TP
Sbjct: 94 PTPATTPTPTKPT-PTAHTPTTPTPTAHTPTKPTP 127
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTP 635
P +P+ +T + S P HTP+TP S P TP
Sbjct: 434 PSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTP 470
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTP 635
P +P+ +T + S P HTP+TP S P TP
Sbjct: 658 PSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTP 694
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTP 635
P +P+ +T + S P +TP+TP S P+TP
Sbjct: 679 PSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITP 715
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
P +P+ +T + S P TP+TP LT P TP
Sbjct: 652 PSTPSTPSTPSTPSTPS--TPSTPSLTHTPSTPSTP 685
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
P +P+ +T + S P TP+TP S S P TP
Sbjct: 467 PSTPSTPSTPSTPSTPS--TPSTPSTPSTSSTPSTP 500
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 389 SAPSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRIT 499
S P K+P+T T+A+VT +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Frame = +2
Query: 287 KSNSVTVQSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG 460
+++ VT Q P+ S + GY D N+ PS S I V ++ W T
Sbjct: 207 EAHIVTEQEAPSCSPEDLAVGYSDGKAHNITWSPIPSNQSNGIIVVYEITWVKVANTTRS 266
Query: 461 GNVLATPSSSRITIGGLALMHQATLPCDLGYINP---IIKSPIPYTNHPRLN 607
L SS+ + L LPC + I+ I P P+T LN
Sbjct: 267 RRALDAASSANTSSTSYRLTD--LLPCSVYNISVRGYTIAGPGPFTRPLSLN 316
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +2
Query: 263 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 370
F +TG E KS+S+T++ +P V ++ +G D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 531 PSPAISATSTRSSN-PRFHTPTTPDLTSISINPLT 632
P IS TS SS PR H PTTP T + P T
Sbjct: 257 PQTTISITSIISSAIPRGHLPTTPSTTPQATPPST 291
>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 585 TPTTPDLTSISINPLTPY 638
TPT PD+T +SI L PY
Sbjct: 75 TPTRPDVTQLSITGLKPY 92
>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
Length = 738
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 122 NAQAGYQSEGVWKKRKHRPRREWPKRQKRLKAQFL 18
NA+A Y + +K H R W + Q+R+KA L
Sbjct: 189 NAEATYNRNYIRQKLDHGLNRIWKEGQERIKAHLL 223
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
P P ++ S +S+NPR HTP P S + PLTP
Sbjct: 77 PRP-LTPPSRQSNNPRPHTP--PSCQSNTPRPLTP 108
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 395 PSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRIT 499
P K+P+T T+A+VT +++ +PS + +T
Sbjct: 816 PETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 850
>SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7)
Length = 159
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 544 IAGEGGLMHKGETANSNARG*RGGQHIASFNCD 446
+ GE GL H G+ +N RG + +S CD
Sbjct: 34 VLGESGLKHSGDVQANNQRGWQVSSKDSSNQCD 66
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 305 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 415
++ + NV+ + RDA+ V AVV+ S PSL+IP+
Sbjct: 1101 IEFVKNVTKMFPLSRDAFSVG--AVVYGSEPSLEIPL 1135
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTT 596
P SP+ S T++ S P HTP T
Sbjct: 146 PQSPSASVTASVSVTPNIHTPVT 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,866,214
Number of Sequences: 59808
Number of extensions: 393472
Number of successful extensions: 1527
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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