Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k17
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 1.3
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 29 2.3
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 29 4.1
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 28 5.4
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 28 7.1
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 27 9.4
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC006677-9|AAF39947.1| 344|Caenorhabditis elegans Serpentine re... 27 9.4
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 514 PYASSHPPLRSRLHQPDHQIPDS 582
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 352
F L F++TG E KS V + S+ +I GYR+
Sbjct: 37 FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 525 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLT 632
KPP+P+ T N + P++P T S PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 495 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 388
+ ++ GV +PP VT+ V+ G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 522 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 635
+ SPAI +T+T +++P+ T TP+ +T++ + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 638
P+P + T+T +NP TPTT TS N ++P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPH 524
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -1
Query: 634 GVRGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 473
G GL D G G G D V + + G+ G +GE N ++G RGG
Sbjct: 167 GPPGLAGQDGLDGAPGEPGVGGMDAVKIVSVDGKIG--RRGEAGNKGSKGSRGG 218
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 431 WTTADVTVEGGNVL-ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLN 607
W T D + A P SR T+ AL H A GY P ++ + + RL+
Sbjct: 24 WKTEDAPRRNNHPAPAPPKPSRPTVDASALQHAAARLRKTGYNEP-VRGDVENLSDGRLD 82
Query: 608 IHFHQSPD 631
Q PD
Sbjct: 83 RPHQQLPD 90
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 522 IKPPSPAISATSTRSSNPRFHTPTT 596
++PPSPA+SA S R R+H PT+
Sbjct: 269 MQPPSPAVSAFSPR----RYHHPTS 289
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 522 IKPPSPAISATSTRSSNPRFHTPTT 596
++PPSPA+SA S R R+H PT+
Sbjct: 269 MQPPSPAVSAFSPR----RYHHPTS 289
>AC006677-9|AAF39947.1| 344|Caenorhabditis elegans Serpentine
receptor, class h protein56 protein.
Length = 344
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 398 SLKIPVTVDLCWTT-ADV--TVEGGNVLATPSSSRITIGGLALM 520
++KIP+ + L W+T D+ TV G + PS+S + +G L +
Sbjct: 56 NMKIPLLISLAWSTNLDLMFTVYSGPYIFFPSASGVPLGLLGYL 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,010
Number of Sequences: 27780
Number of extensions: 286129
Number of successful extensions: 1193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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