Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k17
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50090.1 68414.m05619 aminotransferase class IV family protei...    32   0.40 
At1g50110.1 68414.m05620 branched-chain amino acid aminotransfer...    31   0.93 
At4g00890.1 68417.m00120 proline-rich family protein contains pr...    30   1.6  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    29   2.8  
At1g10060.2 68414.m01135 branched-chain amino acid aminotransfer...    29   2.8  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    28   6.6  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   6.6  
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    28   6.6  
At1g52070.1 68414.m05874 jacalin lectin family protein similar t...    28   6.6  
At5g64090.1 68418.m08049 expressed protein                             27   8.7  
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    27   8.7  
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    27   8.7  

>At1g50090.1 68414.m05619 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 367

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/83 (26%), Positives = 38/83 (45%)
 Frame = +2

Query: 305 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGGNVLATPS 484
           V+S  N S ++K   +A       V+F  A + K    V  C    ++ +  GN+++TP 
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256

Query: 485 SSRITIGGLALMHQATLPCDLGY 553
           +S   + G+       L  D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279


>At1g50110.1 68414.m05620 branched-chain amino acid aminotransferase
           6 / branched-chain amino acid transaminase 6 (BCAT6)
           contains Pfam profile: PF01063 aminotransferase class
           IV; identical to SP|Q9LPM9 Branched-chain amino acid
           aminotransferase 6 (EC 2.6.1.42) (Atbcat-6) {Arabidopsis
           thaliana}
          Length = 356

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/83 (24%), Positives = 39/83 (46%)
 Frame = +2

Query: 305 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGGNVLATPS 484
           V+S  N S ++K   +A       V+F  A + +    +  C    ++ +  GN+++TP 
Sbjct: 198 VKSCTNYSPVVKSLLEAKSAGFSDVLFLDAATGRNIEELTAC----NIFIVKGNIVSTPP 253

Query: 485 SSRITIGGLALMHQATLPCDLGY 553
           +S   + G+     + L  D+GY
Sbjct: 254 TSGTILPGVTRKSISELAHDIGY 276


>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 525 KPPSPAISATSTRS--SNPRFHTPTTPDLTSISINPLTPY*KE 647
           +PP   +  T ++S   +P FH  + P+  S+ ++PL+P  KE
Sbjct: 29  QPPRRTVQETLSQSPPQSPLFHPQSPPEPKSLPLSPLSPKSKE 71


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 478 PFILSHYYWRSRPYASSHPPLRSR---LHQPDHQIPDSIHQPPQT*HP 612
           PF +S     +RP+ +S PP  S+   + QP       + QPP T  P
Sbjct: 488 PFSMSQPSSTARPFPASQPPAASKSFPISQPPTTSKPFVSQPPNTSKP 535


>At1g10060.2 68414.m01135 branched-chain amino acid aminotransferase
           1 / branched-chain amino acid transaminase 1 (BCAT1)
           nearly identical to SP|Q93Y32 Branched-chain amino acid
           aminotransferase 1, mitochondrial precursor (EC
           2.6.1.42) (Atbcat-1) {Arabidopsis thaliana}; contains
           Pfam profile: PF01063 aminotransferase class IV
          Length = 384

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 434 TTADVTVEGGNVLATPSSSRITIGGLALMHQATLPCDLGY 553
           + A++ +  GN + TP++S   +GG+       +  DLGY
Sbjct: 269 SAANIFLVKGNTIVTPATSGTILGGITRKSIIEIALDLGY 308


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 534 SPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPP 671
           +P+ S+  T +S+P F H+  TP  TS   NP+    +E  P  + P
Sbjct: 352 NPSSSSYPTSTSSPSFLHSHYTPSSTSFHTNPVYSMKQEQLPSNQIP 398


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 308 QSLPNVSSIIKGYRDAY 358
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 517 YASSHPPLRSRLHQPDHQIPDSIHQPPQT 603
           Y SS P +RS  H P +  P +   PP T
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTT 469


>At1g52070.1 68414.m05874 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 315

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
 Frame = -1

Query: 634 GVRGLMEMDVKSGVVGV-WNRGFDDRVDVAEIAGEGGL----------MHKGETANSNAR 488
           G+    ++D   G  G  W+ G D   +VA++   GGL          +  G+T +++  
Sbjct: 19  GLAKAQKLDAIGGKGGKQWDDGADHD-NVAKVYIRGGLEGIQYIKFDYVKDGKTIDASIH 77

Query: 487 G*RGGQHIASFNCDVSSSPTKVNCDGYFEARG 392
           G  G     +F  D  +S   V+ DGY++  G
Sbjct: 78  GVSGSGFTQTFEIDYQNSEYIVSVDGYYDKSG 109


>At5g64090.1 68418.m08049 expressed protein 
          Length = 448

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 522 IKPP--SPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
           +KP   SP+ S++++ S+  RF + TTP  T+ +++  +P
Sbjct: 5   VKPSGGSPSPSSSTSSSTPHRFKSVTTPTATAAAVSGFSP 44


>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 472 GHPFILSHYYWRSR-P-YASSHPPLRSRLHQPDHQIP 576
           G P  ++HYYWR   P Y SS+  +   + + ++ +P
Sbjct: 427 GEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLP 463


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -1

Query: 514 GETANSNARG*RGGQHIASFNCDVSSSPTKVNCDGYFEARGGRENDSLKIDKIRVAVAFY 335
           G++    A+G         FN    ++ T + C      +  RE D    D+ +++V  Y
Sbjct: 317 GDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIY 376

Query: 334 DGGD 323
            GG+
Sbjct: 377 HGGN 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,456
Number of Sequences: 28952
Number of extensions: 286219
Number of successful extensions: 1035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)