Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k16
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    25   0.93 
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    25   0.93 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   3.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  

>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 654 RIYTLFSFG--ITYLVCICRFMGR 719
           RIY  +SFG  I   VC+C F G+
Sbjct: 319 RIYFYWSFGFLIVRTVCLCLFGGK 342


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 654 RIYTLFSFG--ITYLVCICRFMGR 719
           RIY  +SFG  I   VC+C F G+
Sbjct: 319 RIYFYWSFGFLIVRTVCLCLFGGK 342


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 654 RIYTLFSFG--ITYLVCICRF 710
           R+Y  +SF   IT +VC+C F
Sbjct: 317 RLYFYWSFALLITRIVCLCLF 337


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 400 SKALFFLKTDKPSSSHLVSIVF 335
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 400 SKALFFLKTDKPSSSHLVSIVF 335
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 400 SKALFFLKTDKPSSSHLVSIVF 335
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 400 SKALFFLKTDKPSSSHLVSIVF 335
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,019
Number of Sequences: 336
Number of extensions: 4112
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)