Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k16
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 153 2e-37
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 140 9e-34
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 129 3e-30
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 32 0.61
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 29 4.3
02_04_0430 + 22834405-22834839 29 4.3
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 5.7
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 7.5
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 7.5
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 7.9
02_02_0106 + 6814391-6817007,6817086-6817462 28 9.9
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 153 bits (371), Expect = 2e-37
Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 4/177 (2%)
Frame = +2
Query: 137 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYA 304
HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I PS+L G D+
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFH 110
Query: 305 VFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAV 484
FK I P WED GG+W S + + D WL +L +IGE F+ DEICGAV
Sbjct: 111 CFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAV 166
Query: 485 VNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 655
V+VR K ++IAIWT +A + A I IGK+ KE L IGF VH D + K+ ++
Sbjct: 167 VSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 140 bits (340), Expect = 9e-34
Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Frame = +2
Query: 137 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 307
H L QW+ W+ + K W +L + TFDTVE+FW LY I PS++ D+ +
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHL 89
Query: 308 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 487
FK G+ P WED GG+W + +K T L+ WL+ ++ LIGE F+ S+EICG V
Sbjct: 90 FKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVA 146
Query: 488 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRD 625
+VR + DK+A+WT A + + IGKK KE + + K+ + H D
Sbjct: 147 SVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDD 192
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 129 bits (311), Expect = 3e-30
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 4/180 (2%)
Frame = +2
Query: 137 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 307
HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHL 108
Query: 308 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 487
FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V+
Sbjct: 109 FKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVL 164
Query: 488 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI-HGKIGFQVHRDTMVKHSSATKNLY 664
+VR D +++W +A A + + +K L + H + D ++ +S+ +N +
Sbjct: 165 SVRFNEDILSVWNRNASDHQAVMTLRDSIKRHLKLPHSYLMEYKPHDASLRDNSSYRNTW 224
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 509 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 655
++A WT A+K + G L G+ VHR VKH +A+K
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNASK 228
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = +2
Query: 371 ISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV-NVRPKV----DKIAIWTADA 535
IS+ KK F D RF+ D + + E + + G + N+ K+ KI + +
Sbjct: 218 ISMYKKMWFPD--RFYKDYLKAMFNNRKERMELLQGLITSNMDAKIPTFQQKIMLIWGEE 275
Query: 536 MKQHATIEIGKKLKEQLG----IHG--KIGFQVH 619
K IE+ KK+KEQLG +HG K G +H
Sbjct: 276 DKIF-DIELAKKMKEQLGDGCFLHGIPKAGHLLH 308
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 384 FSRLISHLPPILLASSSHIGRM 319
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 107 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 202
AEV PE ++ HP +Q + Y D N +W E
Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 258 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 401
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 281 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 424
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 7.9
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +3
Query: 252 CTIILSYRQNFAKVMTMQYSSKAFVLC 332
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 318 AFVLCGKTMLTRWEEDGLSVLRKN 389
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 471 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 316
+ SE K SP+ SN NLS + CF +L S I++ ++S G++P
Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,414,860
Number of Sequences: 37544
Number of extensions: 404195
Number of successful extensions: 915
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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