Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k16
         (801 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.8  
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        24   4.8  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        24   4.8  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        24   4.8  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        24   4.8  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   4.8  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 569  KLKEQLGIHGKIGFQVHRDTMVKHSSAT 652
            ++KE++G   +IG+ V R+ + +H+  T
Sbjct: 2912 QIKEKVGKMKQIGYHVSRNDVTQHAITT 2939


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 689 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 594
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 689 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 594
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 689 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 594
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 689 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 594
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 689 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 594
           IC   T  C DSWS +     C C      C+
Sbjct: 577 ICTCGTCSCFDSWSGDN----CECTTDTTGCK 604


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,598
Number of Sequences: 2352
Number of extensions: 15914
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84408009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)