Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k14
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 32 0.36
02_04_0609 + 24312528-24313352 31 0.82
06_03_0830 + 25159758-25162460 30 1.9
09_02_0060 + 3729613-3729863,3730377-3730392 28 5.8
07_01_0159 - 1116786-1117153,1117251-1119936 28 5.8
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 28 5.8
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 28 5.8
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 7.7
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 7.7
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 32.3 bits (70), Expect = 0.36
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -1
Query: 594 SGPVLGSIKH-TIMLSTSNRNMPLSSTV--LVGVIPLNTINMDLNSLISKFAVPRVMVTL 424
SGPV GSI + + ++ S + L+ TV L L +++ N+ +S A PR TL
Sbjct: 253 SGPVPGSIANLSRLMELSLASNQLNGTVPDLTSANALTYVDLSNNNFMSSPA-PRWFSTL 311
Query: 423 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSS 316
+ F D + T+P + P L + SL +S
Sbjct: 312 TSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNS 347
>02_04_0609 + 24312528-24313352
Length = 274
Score = 31.1 bits (67), Expect = 0.82
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = -1
Query: 594 SGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPR 439
S + G+I ++ S+S + LS+ +LVG IP N +++D N+L
Sbjct: 132 SNSLHGAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTI 191
Query: 438 VMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 304
+T L++L F + S ++P K+ +P L++ L +++ G
Sbjct: 192 GDITSLEILYLFQNQL--SGSIPDKIWQLPNLMQLVLGENNLSGG 234
>06_03_0830 + 25159758-25162460
Length = 900
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/103 (28%), Positives = 42/103 (40%)
Frame = +2
Query: 122 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 301
W + ++ ASP E S ++R L + V+ A LS +
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611
Query: 302 KPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 430
PLS D + K+ S VG NS+ L + AA T+SNV
Sbjct: 612 -PLSSDIVRKDASATVGLNSLELD--LNCPCDDEEAAITTSNV 651
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 254 ANWPPGRY*ALRLIVCSRLIPPIRC 180
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 612 RTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINM-DLNSLI 460
RT ++G I I L ++ RNM L S L G+IP N+ LN++I
Sbjct: 154 RTLDVSRNHLVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVI 205
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 197 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 376
SD+NK + KL + ++ R GDNK +K +D + +N + L
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261
Query: 377 VYDY 388
YD+
Sbjct: 262 KYDF 265
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 209 CSRLIPPIRC-SALNWATPRLR 147
CS +PP+RC L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 305 PLSID 319
P S+D
Sbjct: 214 PFSVD 218
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +2
Query: 134 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 313
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 314 IDDIVKEGS 340
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,719
Number of Sequences: 37544
Number of extensions: 371173
Number of successful extensions: 1028
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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