Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k14
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 32 0.32
Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 31 0.97
Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical ... 29 3.0
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 28 5.2
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 28 5.2
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 28 5.2
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical
protein T14B4.3 protein.
Length = 296
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -3
Query: 634 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 461
+V F +FG VG QA F+ A+++ G F+Y+ H F F D
Sbjct: 38 SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 32.3 bits (70), Expect = 0.32
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 149 LTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMY-IAEKPLSIDDI 325
LT SPS ++S+S+E + ++ N ++ A R A+ KL + + ++ + +++DD
Sbjct: 209 LTADSPSSRRTSKSLEENSSETTNDSISLADDEETREAY--RKLFKDFAMSSQKMTLDDF 266
Query: 326 VKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 430
+E SN G L TV+++ V N + SN+
Sbjct: 267 KQEFSNLPGDPPSDLCTVFNHPVN--NKKNRYSNI 299
>Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 215 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 379
LN+ L + L DN + + + ++ D ++K +G N NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201
Query: 380 YDYGVKSPNAASTSSNVT 433
YDY V SP +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218
>Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 215 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 379
LN+ L + L DN + + + ++ D ++K +G N NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201
Query: 380 YDYGVKSPNAASTSSNVT 433
YDY V SP +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218
>Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical
protein C47E8.3 protein.
Length = 405
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -1
Query: 381 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 205
Y + + + + T+ E ++ SS++ GF +Y +LN ++S + R + F NRL
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333
Query: 204 SSDSTDSL 181
+ S D+L
Sbjct: 334 HTASVDTL 341
>AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical
protein Y48G9A.9a protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 137 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 292
N N++ E P+ QSS E+D++ R V+ LNN +A ++ G L++ Y
Sbjct: 17 NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
TNA LN++T ++ S SSES S + + K + A+ ++ H + + + Y +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 305 PL 310
P+
Sbjct: 223 PI 224
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
TNA LN++T ++ S SSES S + + K + A+ ++ H + + + Y +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 305 PL 310
P+
Sbjct: 223 PI 224
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
TNA LN++T ++ S SSES S + + K + A+ ++ H + + + Y +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 305 PL 310
P+
Sbjct: 223 PI 224
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 421 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 245
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715
Query: 244 H 242
H
Sbjct: 716 H 716
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 421 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 245
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 677 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 736
Query: 244 H 242
H
Sbjct: 737 H 737
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 421 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 245
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715
Query: 244 H 242
H
Sbjct: 716 H 716
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 410 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 505
A+TS+NVT + T NFD +K + V GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,265
Number of Sequences: 27780
Number of extensions: 322770
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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