Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k14
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.16 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.16 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.65 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.65 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.65 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.65 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 630 LDLRNSRTSRSDSGPVLGSIK-HTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLIS 457
           LDLRN+   R +S   L     HT+ LS  N+   + + +  G+  LN + +  N++ S
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELS-DNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 517 CRGQWHVAIRSRQHDCVLDRPQHGA--AVRTRGARIAQI 627
           C G + V + S +    LD P H A  ++R RGA I  I
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFISMRHRGAHITDI 219


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 275 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 385
           K  Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 383 DYGVKSPNAAS-TSSNVTMTRGTAN 454
           +Y +   +AAS TSS V +TRGT N
Sbjct: 6   NYALDVSSAASKTSSKVMLTRGTVN 30


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 275 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 385
           K  Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 275 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 385
           K  Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 113 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 149


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 510 VGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAF-GDL 394
           +G +P+N IN+ L   I       ++ +LL ++ A+ GD+
Sbjct: 72  IGSVPVNNINLILLQNIIDICWITMVYSLLGIIIAYTGDV 111


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 140 LNSLTEASPSLGQSSESVESDENK----RLNVKLNNARVANLR 256
           ++SL E       SS SVE  EN+     LN +  + R+ +LR
Sbjct: 326 ISSLDEIRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQDLR 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,827
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)