Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k14
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30260.1 68414.m03701 expressed protein 35 0.056
At2g36810.1 68415.m04514 expressed protein 31 0.69
At2g28310.2 68415.m03438 expressed protein contains Pfam profile... 29 2.8
At2g28310.1 68415.m03437 expressed protein contains Pfam profile... 29 2.8
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 29 2.8
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 29 2.8
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 29 2.8
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 29 3.7
At5g37050.1 68418.m04444 hypothetical protein hypothetical prote... 28 4.9
At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A... 28 4.9
At4g35890.1 68417.m05097 La domain-containing protein contains P... 28 6.4
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik... 27 8.5
>At1g30260.1 68414.m03701 expressed protein
Length = 97
Score = 34.7 bits (76), Expect = 0.056
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +2
Query: 320 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 478
D +KE +VGT+SIF + + SP + +S S++ + T G F + E +
Sbjct: 31 DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90
Query: 479 MFIVFK 496
F VFK
Sbjct: 91 SFPVFK 96
>At2g36810.1 68415.m04514 expressed protein
Length = 1071
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 16 NICTT*ISLELKL*IKTNHVENRVIDRFARTDLSL 120
N CTT +S+E KL I+T + +++D+F LSL
Sbjct: 616 NACTTLVSVEPKLTIETRNRVMKILDQFFSISLSL 650
>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = -1
Query: 546 SNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPR 367
+N N + T ++G++ I + L SL K +P +++ LDV A GD +P + R
Sbjct: 13 TNENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSPEDFG-SR 70
Query: 366 KM--LLVPT------LLEPSLTMSSID 310
K + VPT LL P + ++ D
Sbjct: 71 KFPEIYVPTNPRGAELLPPGIVVAKTD 97
>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = -1
Query: 546 SNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPR 367
+N N + T ++G++ I + L SL K +P +++ LDV A GD +P + R
Sbjct: 13 TNENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSPEDFG-SR 70
Query: 366 KM--LLVPT------LLEPSLTMSSID 310
K + VPT LL P + ++ D
Sbjct: 71 KFPEIYVPTNPRGAELLPPGIVVAKTD 97
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +2
Query: 323 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 478
+V + S N + L V+DY P+A T SS + +G A N+D K +K+
Sbjct: 75 VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134
Query: 479 MFIVFKGITPTKTVEDNGMLRF 544
+ + P+ + G+L F
Sbjct: 135 NVFPPRRVNPSDVIILEGILIF 156
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +2
Query: 323 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 478
+V + S N + L V+DY P+A T SS + +G A N+D K +K+
Sbjct: 75 VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134
Query: 479 MFIVFKGITPTKTVEDNGMLRF 544
+ + P+ + G+L F
Sbjct: 135 NVFPPRRVNPSDVIILEGILIF 156
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +2
Query: 323 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 478
+V + S N + L V+DY P+A T SS + +G A N+D K +K+
Sbjct: 75 VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134
Query: 479 MFIVFKGITPTKTVEDNGMLRF 544
+ + P+ + G+L F
Sbjct: 135 NVFPPRRVNPSDVIILEGILIF 156
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 271
T ++SLT S+ QSS+ + SDE K N + +N + + I D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168
>At5g37050.1 68418.m04444 hypothetical protein hypothetical protein
T28J14.60 - Arabidopsis thaliana, PIR:T48483
Length = 165
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -1
Query: 615 SRTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPL 493
SRT R+ +GP + S ML+T+N + ++S +L G + +
Sbjct: 29 SRTLRTSAGPPVASSSLFRMLATTNVSTDVASMMLDGTVKI 69
>At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 510
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/108 (25%), Positives = 46/108 (42%)
Frame = +2
Query: 296 AEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 475
A K + D K+G+ K N+ + GV +P A S N IK+
Sbjct: 58 AGKSAASDSGFKDGNLKSSGNN---NNNNNNGVFTPYEALPSFKDVPNTEKQNLFIKKLN 114
Query: 476 SMFIVFKGITPTKTVEDNGMLRFEVDSMIVCLIDPNTGPLSEREVREL 619
+VF PTK +++ + R + ++ + PN G SE ++E+
Sbjct: 115 LCRVVFDFTDPTKNIKEKDIKRQTLLELVDYVNSPN-GKFSEVGIQEV 161
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 27.9 bits (59), Expect = 6.4
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Frame = +2
Query: 146 SLTEASPSLGQSS-ESVESDENKRLNVKLNNARVANL--RIAHGDNKLSQMYIAEKPLSI 316
S++ A+P+ + E+ DE + +NA + R ++G +++ + A ++
Sbjct: 79 SVSVAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVGPVMGASSWPAL 138
Query: 317 DDIVKEGSNKVGTNSI-FLGTVYDYGVKSPNAASTSSNVTMTRGTANFDI 463
+ K SNK ++S+ LG V P+++S SS+V +T+G AN +
Sbjct: 139 SETTKAPSNKSSSDSLKSLGDV-------PSSSSASSSVPVTQGIANASV 181
>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
protein GI:12006424 from [Arabidopsis thaliana];
contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
SAP domain; contains TIGRfam profile TIGR00578:
ATP-dependent DNA helicase ii, 70 kDa subunit
Length = 621
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 134 LNLNSLTEASPSLGQSSESVESDENKRLNVK 226
LN + LTE PS+GQ E ++ KR+ K
Sbjct: 234 LNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,782
Number of Sequences: 28952
Number of extensions: 295046
Number of successful extensions: 870
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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