Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k13
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 334 YYVLKSIISDLLMGAQGKVFDPL 402
           YYV +S +S  L  A+  +FDP+
Sbjct: 575 YYVCRSGLSYHLSCAENMMFDPM 597


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 LEVVIITNSDGDHDGYLELTAAAKIMSPFISN 198
           ++V+     DG H GY++  A A +  P +++
Sbjct: 1   MDVLQKNYDDGIHPGYMDGGAGAGLYEPHVAH 32


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +1

Query: 397 PLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQD 531
           P C V    CA++    +A    +   +  + +PD+ K++  + D
Sbjct: 255 PECVVPEVQCAVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSD 299


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 343 ERNIL*DVFYYSNCNLTDI 287
           ERN+   V Y  N N+TD+
Sbjct: 14  ERNLSYKVMYNGNNNVTDL 32


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 496 PDINKLQDMIQDLQSEYNK 552
           P +NK +D+ QDL  + +K
Sbjct: 286 PKLNKHEDLPQDLSMKLSK 304


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 496 PDINKLQDMIQDLQSEYNK 552
           P +NK +D+ QDL  + +K
Sbjct: 178 PKLNKHEDLPQDLSMKLSK 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,724
Number of Sequences: 336
Number of extensions: 4233
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)